myRT

myRT report for GCA_002136415.1_ASM213641v1

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Seq: NFFP01000048.1 Pseudomonas aeruginosa strain S708_C14_RS S708_C14_RS_NODE_48_length_43969, whole genome shotgun sequence (43969 bp)
Overview 1 RT 1: 32330-39254 bp Neighborhood of RT #1 [32330, 39337] CHD CHD RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 32330-33874 bp Ori: OTH88505.1 Feature: domain Description: CHD Location: 32546-32960 bp Feature: domain Description: CHD Location: 32546-32960 bp Feature: domain Description: CHD Location: 33188-33677 bp Feature: domain Description: CHD Location: 331 88-33677 bp Feature: gene Location: 35393-35719 bp Feature: gene Location: 35869-37137 bp Ori: OTH88506.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36082-36739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36082-36739 bp Feature: domain Description: GIIM Note: maturase Location: 36817-37039 bp Feature: domain Description: GIIM Note: maturase Location: 3681 7-37039 bp Feature: gene Location: 37657-38167 bp Feature: domain Description: DUF772 Location: 37807-38002 bp Feature: domain Description: DUF772 Location: 37807-38002 bp Feature: gene Location: 38510-39337 bp Ori: OTH88507.1 Feature: domain Description: ABC_phnC Location: 38540-39254 bp Feature: domain Description: ABC_phnC Location: 38540-39254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: NFFP01000055.1 Pseudomonas aeruginosa strain S708_C14_RS S708_C14_RS_NODE_55_length_36122, whole genome shotgun sequence (36122 bp)
Overview 1 RT 1: 1875-9186 bp Neighborhood of RT #1 [1875, 10241] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1875-3014 bp Ori: OTH88200.1 Feature: domain Description: AAA_21 Location: 1947-2016 bp Feature: domain Description: AAA_2 1 Location: 1947-2 016 bp Feature: domain Description: AAA_21 Location: 2490-2820 bp Feature: domain Description: AAA_2 1 Location: 2 490-2 82 0 bp Feature: gene Location: 3014-3571 bp Feature: gene Location: 4090-6588 bp Ori: OTH88216.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4093-4534 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4093-4534 bp Feature: gene Location: 7626-8366 bp Ori: OTH88202.1 Feature: domain Description: YeeA Location: 7641-8232 bp Feature: domain Description: YeeA Location: 7641-82 32 bp Feature: gene Location: 8370-10241 bp Ori: OTH88203.1 Feature: domain Description: DUF262 Location: 8418-9186 bp Feature: domain Description: DUF2 62 Location: 8418-9186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: NFFP01000004.1 Pseudomonas aeruginosa strain S708_C14_RS S708_C14_RS_NODE_4_length_279470, whole genome shotgun sequence (279470 bp)
Overview 1 RT 1: 50187-58357 bp 2 RT 2: 74621-84917 bp Neighborhood of RT #1 [50187, 58365] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74621, 84928] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50187-51203 bp Ori: OTH96287.1 Feature: domain Description: COG3178 Location: 50190-51189 bp Feature: domain Description: COG3 178 Location: 50190-51189 bp Feature: gene Location: 52076-52288 bp Feature: gene Location: 52476-54188 bp Ori: OTH96289.1 Feature: domain Description: RVT_N Location: 52533-52776 bp Feature: domain Description: RVT_N Location: 5253 3 -52776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52821-53457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52821-53 457 bp Feature: domain Description: YkfC Location: 53667-53817 bp Feature: domain Description: YkfC Location: 53 667-53 817 bp Feature: domain Description: HNH Note: nucleases Location: 53994-54132 bp Feature: domain Description: HNH Note: nucleases Location: 53 994-5413 2 bp Feature: gene Location: 54321-57092 bp Ori: OTH96290.1 Feature: domain Description: LptD Location: 54516-57078 bp Feature: domain Description: LptD Location: 54516-57078 bp Feature: gene Location: 57073-58365 bp Ori: OTH96291.1 Feature: domain Description: PRK10770 Location: 57163-58357 bp Feature: domain Description: PRK10770 Location: 57163 -583 57 bp Feature: gene Location: 74621-76474 bp Ori: OTH96309.1 Feature: domain Description: PRK05658 Location: 74633-76472 bp Feature: domain Description: PRK05658 Location: 7463 3 -76472 bp Feature: gene Location: 76581-80318 bp Ori: OTH96310.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76689-77346 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76689-773 46 bp Feature: domain Description: PRK09776 Location: 77559-78030 bp Feature: domain Description: PRK09776 Location: 77559-7803 0 bp Feature: domain Description: PAS Location: 78087-78612 bp Feature: domain Description: PAS Location: 78087-78612 bp Feature: domain Description: PRK10060 Location: 78624-80268 bp Feature: domain Description: PRK10060 Location: 78624-80268 bp Feature: gene Location: 81399-83084 bp Ori: OTH96311.1 Feature: domain Description: RVT_N Location: 81456-81696 bp Feature: domain Description: RVT_N Location: 81456-81696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81744-82380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81744-823 80 bp Feature: domain Description: GIIM Note: maturase Location: 82434-82665 bp Feature: domain Description: GIIM Note: maturase Location: 8243 4-82665 bp Feature: domain Description: HNH Note: nucleases Location: 82917-83055 bp Feature: domain Description: HNH Note: nucleases Location: 82917-83 055 bp Feature: gene Location: 83412-83548 bp Feature: gene Location: 83807-84928 bp Ori: OTH96312.1 Feature: domain Description: COG3177 Location: 83825-84917 bp Feature: domain Description: COG3 177 Location: 83 825-84917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: NFFP01000016.1 Pseudomonas aeruginosa strain S708_C14_RS S708_C14_RS_NODE_16_length_172313, whole genome shotgun sequence (172313 bp)
Overview 1 RT 1: 86781-91533 bp Neighborhood of RT #1 [86781, 91533] YgfZ RVT_N RVT-GII YkfC HNH SdhE Feature: gene Location: 86781-87725 bp Ori: OTH92435.1 Feature: domain Description: YgfZ Location: 86790-87690 bp Feature: domain Description: YgfZ Location: 86790-87690 bp Feature: gene Location: 88682-88959 bp Feature: gene Location: 89046-90767 bp Ori: OTH92436.1 Feature: domain Description: RVT_N Location: 89103-89340 bp Feature: domain Description: RVT_N Location: 89103-8934 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89391-90027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89391-90027 bp Feature: domain Description: YkfC Location: 90225-90381 bp Feature: domain Description: YkfC Location: 90225-90381 bp Feature: domain Description: HNH Note: nucleases Location: 90564-90702 bp Feature: domain Description: HNH Note: nucleases Location: 90564 -90702 bp Feature: gene Location: 90843-91097 bp Ori: OTH92437.1 Feature: domain Description: SdhE Location: 90849-91089 bp Feature: domain Description: SdhE Location: 9084 9-91089 bp Feature: gene Location: 91081-91533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YgfZ (COG0354), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)