myRT

myRT report for GCA_002136455.1_ASM213645v1

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Seq: NFGC01000001.1 Pseudomonas aeruginosa strain S461_C10_RS S461_C10_RS_NODE_1_length_611227, whole genome shotgun sequence (611227 bp)
Overview 1 RT 1: 160657-166390 bp Neighborhood of RT #1 [160657, 166390] DEXHc_Snf RVT_N RVT-GII GIIM HNHc KOG1000 SF2_C_SNF Feature: gene Location: 160657-160962 bp Feature: gene Location: 161098-162153 bp Feature: domain Description: DEXHc_Snf Location: 161317-161578 bp Feature: domain Description: DEXHc_Snf Location: 1 61 31 7-1 61 578 bp Feature: gene Location: 162750-164468 bp Feature: RT Description: RVT_N Location: 162807-163044 bp Feature: RT Description: RVT_N Location: 1 62807-1 63044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163095-163746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 63095-1 63746 bp Feature: domain Description: GIIM Note: maturase Location: 163800-164031 bp Feature: domain Description: GIIM Note: maturase Location: 1 63800-1 64031 bp Feature: domain Description: HNHc Note: nucleases Location: 164265-164421 bp Feature: domain Description: HNHc Note: nucleases Location: 1 64265-1 64421 bp Feature: gene Location: 164536-165795 bp Feature: domain Description: KOG1000 Location: 164551-164686 bp Feature: domain Description: KOG1 000 Location: 1 64551 -1 64686 bp Feature: domain Description: SF2_C_SNF Location: 165253-165631 bp Feature: domain Description: SF2_C_SNF Location: 1 65253-1 65631 bp Feature: gene Location: 165908-166390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), SF2_C_SNF (cd18793)

Seq: NFGC01000006.1 Pseudomonas aeruginosa strain S461_C10_RS S461_C10_RS_NODE_6_length_222870, whole genome shotgun sequence (222870 bp)
Overview 1 RT 1: 137780-148086 bp 2 RT 2: 164345-172538 bp Neighborhood of RT #1 [137780, 148088] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [164345, 172552] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 137780-138901 bp Feature: domain Description: COG3177 Location: 137798-138890 bp Feature: domain Description: COG3177 Location: 137798-138890 bp Feature: gene Location: 139160-139296 bp Feature: gene Location: 139625-141310 bp Feature: RT Description: RVT_N Location: 139682-139922 bp Feature: RT Description: RVT_N Location: 139682 -13992 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139970-140606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139970-140606 bp Feature: domain Description: GIIM Note: maturase Location: 140660-140891 bp Feature: domain Description: GIIM Note: maturase Location: 140660-140891 bp Feature: domain Description: HNH Note: nucleases Location: 141143-141281 bp Feature: domain Description: HNH Note: nucleases Location: 141143-1412 81 bp Feature: gene Location: 142391-146128 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 142499-143156 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 142 499-143156 bp Feature: domain Description: PRK09776 Location: 143369-143840 bp Feature: domain Description: PRK09776 Location: 143369-143840 bp Feature: domain Description: PAS Location: 143900-144422 bp Feature: domain Description: PAS Location: 143900-14442 2 bp Feature: domain Description: PRK10060 Location: 144431-146078 bp Feature: domain Description: PRK10060 Location: 144431-146078 bp Feature: gene Location: 146235-148088 bp Feature: domain Description: PRK05658 Location: 146247-148086 bp Feature: domain Description: PRK05658 Location: 1462 47-148086 bp Feature: gene Location: 164345-165637 bp Feature: domain Description: PRK10770 Location: 164435-165629 bp Feature: domain Description: PRK10770 Location: 164435-16562 9 bp Feature: gene Location: 165618-168419 bp Feature: domain Description: LptD Location: 165813-168405 bp Feature: domain Description: LptD Location: 165813-168405 bp Feature: gene Location: 168552-170264 bp Feature: RT Description: RVT_N Location: 168609-168852 bp Feature: RT Description: RVT_N Location: 168609-168852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168897-169530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168897-169530 bp Feature: domain Description: YkfC Location: 169743-169893 bp Feature: domain Description: YkfC Location: 169743-169893 bp Feature: domain Description: HNH Note: nucleases Location: 170070-170208 bp Feature: domain Description: HNH Note: nucleases Location: 170070-1702 08 bp Feature: gene Location: 170451-170663 bp Feature: gene Location: 171536-172552 bp Feature: domain Description: COG3178 Location: 171539-172538 bp Feature: domain Description: COG3178 Location: 171539-172 538 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )