myRT

myRT report for GCA_002136495.1_ASM213649v1

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Seq: NFGP01000025.1 Pseudomonas aeruginosa strain S220_C06_RS S220_C06_RS_NODE_25_length_98562, whole genome shotgun sequence (98562 bp)
Overview 1 RT 1: 40840-46670 bp Neighborhood of RT #1 [40840, 46675] SdhE RVT_N RVT-GII YkfC HNHc YgfZ HDOD Feature: gene Location: 40840-41292 bp Feature: gene Location: 41276-41530 bp Feature: domain Description: SdhE Location: 41282-41522 bp Feature: domain Description: SdhE Location: 41 282-41 522 bp Feature: gene Location: 41620-43326 bp Feature: RT Description: RVT_N Location: 41677-41920 bp Feature: RT Description: RVT_N Location: 41 677-41 920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41965-42601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 965-42601 bp Feature: domain Description: YkfC Location: 42799-42904 bp Feature: domain Description: YkfC Location: 42799-42904 bp Feature: domain Description: HNHc Note: nucleases Location: 43114-43270 bp Feature: domain Description: HNHc Note: nucleases Location: 431 1 4-43270 bp Feature: gene Location: 44794-45738 bp Feature: domain Description: YgfZ Location: 44803-45703 bp Feature: domain Description: YgfZ Location: 44803-45703 bp Feature: gene Location: 45839-46675 bp Feature: domain Description: HDOD Location: 45842-46670 bp Feature: domain Description: HDOD Location: 45842-46670 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), YgfZ (COG0354), HDOD (pfam08668)

Seq: NFGP01000092.1 Pseudomonas aeruginosa strain S220_C06_RS S220_C06_RS_NODE_92_length_2426, whole genome shotgun sequence (2426 bp)
Overview 1 RT 1: 621-2292 bp Neighborhood of RT #1 [621, 2339] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 621-2339 bp Feature: RT Description: RVT_N Location: 678-915 bp Feature: RT Description: RVT_N Location: 678-915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 966-1617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 966-1617 bp Feature: domain Description: GIIM Note: maturase Location: 1671-1902 bp Feature: domain Description: GIIM Note: maturase Location: 1671-1902 bp Feature: domain Description: HNHc Note: nucleases Location: 2136-2292 bp Feature: domain Description: HNHc Note: nucleases Location: 2 136-2 2 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NFGP01000098.1 Pseudomonas aeruginosa strain S220_C06_RS S220_C06_RS_NODE_98_length_1858, whole genome shotgun sequence (1858 bp)
Overview 1 RT 1: 36-1690 bp Neighborhood of RT #1 [36, 1788] RVT-GII GIIM Feature: gene Location: 36-131 bp Feature: gene Location: 520-1788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 3 -13 90 bp Feature: domain Description: GIIM Note: maturase Location: 1468-1690 bp Feature: domain Description: GIIM Note: maturase Location: 1468-1690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NFGP01000027.1 Pseudomonas aeruginosa strain S220_C06_RS S220_C06_RS_NODE_27_length_95900, whole genome shotgun sequence (95900 bp)
Overview 1 RT 1: 49935-59586 bp Neighborhood of RT #1 [49935, 59591] DUF262 COG3472 HATPase_c_3 RVT-Retrons DUF4354 CoxL Feature: gene Location: 49935-51599 bp Feature: domain Description: DUF262 Location: 50040-50625 bp Feature: domain Description: DUF262 Location: 5004 0-50625 bp Feature: domain Description: COG3472 Location: 50757-51585 bp Feature: domain Description: COG34 72 Location: 50757-51585 bp Feature: gene Location: 51708-53663 bp Feature: domain Description: HATPase_c_3 Location: 51777-52125 bp Feature: domain Description: HATPase_c_3 Location: 51777-52125 bp Feature: gene Location: 53844-54797 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53955-54549 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53955-54 54 9 bp Feature: gene Location: 56514-56894 bp Feature: domain Description: DUF4354 Location: 56517-56883 bp Feature: domain Description: DUF4 354 Location: 56517-56883 bp Feature: gene Location: 57387-59591 bp Feature: domain Description: CoxL Location: 57405-59586 bp Feature: domain Description: CoxL Location: 574 05-59586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), COG3472 (Uncharacterized protein ), HATPase_c_3 (pfam13589), RVT-Retrons, DUF4354 (pfam14263), CoxL (COG1529)

Seq: NFGP01000004.1 Pseudomonas aeruginosa strain S220_C06_RS S220_C06_RS_NODE_4_length_299316, whole genome shotgun sequence (299316 bp)
Overview 1 RT 1: 132140-136404 bp Neighborhood of RT #1 [132140, 136418] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 132140-132580 bp Feature: gene Location: 132688-133053 bp Feature: gene Location: 134057-135166 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 134234-134918 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 134234-134918 bp Feature: gene Location: 135439-135795 bp Feature: domain Description: Avd_like Location: 135466-135769 bp Feature: domain Description: Avd_like Location: 135 466-135 769 bp Feature: gene Location: 135834-136418 bp Feature: domain Description: DUF1566 Location: 136080-136404 bp Feature: domain Description: DUF15 66 Location: 136080-136404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)