myRT

myRT report for GCA_002136515.1_ASM213651v1

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Seq: NFGQ01000010.1 Pseudomonas aeruginosa strain S143_C02_RS S143_C02_RS_NODE_10_length_207561, whole genome shotgun sequence (207561 bp)
Overview 1 RT 1: 50243-58413 bp Neighborhood of RT #1 [50243, 58421] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Feature: gene Location: 50243-51259 bp Feature: domain Description: COG3178 Location: 50246-51245 bp Feature: domain Description: COG31 78 Location: 50246-51 245 bp Feature: gene Location: 52132-52344 bp Feature: gene Location: 52532-54244 bp Feature: RT Description: RVT_N Location: 52589-52832 bp Feature: RT Description: RVT_N Location: 52589-52832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52877-53513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52877-5351 3 bp Feature: domain Description: YkfC Location: 53723-53873 bp Feature: domain Description: YkfC Location: 53723-53873 bp Feature: domain Description: HNH Note: nucleases Location: 54050-54188 bp Feature: domain Description: HNH Note: nucleases Location: 54050-541 88 bp Feature: gene Location: 54377-57148 bp Feature: domain Description: LptD Location: 54572-57134 bp Feature: domain Description: LptD Location: 54572-571 34 bp Feature: gene Location: 57129-58421 bp Feature: domain Description: PRK10770 Location: 57219-58413 bp Feature: domain Description: PRK1 0770 Location: 5721 9-5841 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: NFGQ01000005.1 Pseudomonas aeruginosa strain S143_C02_RS S143_C02_RS_NODE_5_length_292627, whole genome shotgun sequence (292627 bp)
Overview 1 RT 1: 49219-53626 bp Neighborhood of RT #1 [49219, 53802] ATPgrasp_ST ATPgrasp_Ter IS5 RVT-GII GIIM DUF772 Feature: gene Location: 49219-50217 bp Feature: domain Description: ATPgrasp_ST Location: 49531-49723 bp Feature: domain Description: ATPgrasp_ST Location: 49531-4972 3 bp Feature: domain Description: ATPgrasp_Ter Location: 49819-50194 bp Feature: domain Description: ATPgrasp_Ter Location: 49819-50194 bp Feature: gene Location: 50972-51442 bp Feature: domain Description: IS5 Location: 50978-51416 bp Feature: domain Description: IS5 Location: 50978-51416 bp Feature: gene Location: 51502-52770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51715-52372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51715-52 372 bp Feature: domain Description: GIIM Note: maturase Location: 52450-52672 bp Feature: domain Description: GIIM Note: maturase Location: 52 450-52 672 bp Feature: gene Location: 53159-53254 bp Feature: gene Location: 53290-53802 bp Feature: domain Description: DUF772 Location: 53440-53626 bp Feature: domain Description: DUF772 Location: 53440-5362 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ATPgrasp_ST (pfam14397), ATPgrasp_Ter (pfam15632), IS5 (COG3039), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: NFGQ01000025.1 Pseudomonas aeruginosa strain S143_C02_RS S143_C02_RS_NODE_25_length_95900, whole genome shotgun sequence (95900 bp)
Overview 1 RT 1: 49935-59586 bp Neighborhood of RT #1 [49935, 59591] DUF262 COG3472 HATPase_c_3 RVT-Retrons DUF4354 CoxL Feature: gene Location: 49935-51599 bp Feature: domain Description: DUF262 Location: 50040-50625 bp Feature: domain Description: DUF262 Location: 50040-50625 bp Feature: domain Description: COG3472 Location: 50757-51585 bp Feature: domain Description: COG3 472 Location: 50757-51585 bp Feature: gene Location: 51708-53663 bp Feature: domain Description: HATPase_c_3 Location: 51777-52125 bp Feature: domain Description: HATPase_c_3 Location: 51777-52125 bp Feature: gene Location: 53844-54797 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53955-54549 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53 955-54549 bp Feature: gene Location: 56514-56894 bp Feature: domain Description: DUF4354 Location: 56517-56883 bp Feature: domain Description: DUF43 54 Location: 56517-56883 bp Feature: gene Location: 57387-59591 bp Feature: domain Description: CoxL Location: 57405-59586 bp Feature: domain Description: CoxL Location: 57405-59586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), COG3472 (Uncharacterized protein ), HATPase_c_3 (pfam13589), RVT-Retrons, DUF4354 (pfam14263), CoxL (COG1529)

Seq: NFGQ01000082.1 Pseudomonas aeruginosa strain S143_C02_RS S143_C02_RS_NODE_82_length_2992, whole genome shotgun sequence (2992 bp)
Overview 1 RT 1: 75-1725 bp Neighborhood of RT #1 [75, 1781] RVT_N RVT-GII YkfC HNHc Feature: gene Location: 75-1781 bp Feature: RT Description: RVT_N Location: 132-375 bp Feature: RT Description: RVT_N Location: 132-375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420-1056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 20-1056 bp Feature: domain Description: YkfC Location: 1254-1359 bp Feature: domain Description: YkfC Location: 1254 -1359 bp Feature: domain Description: HNHc Note: nucleases Location: 1569-1725 bp Feature: domain Description: HNHc Note: nucleases Location: 1569-1725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: NFGQ01000015.1 Pseudomonas aeruginosa strain S143_C02_RS S143_C02_RS_NODE_15_length_165951, whole genome shotgun sequence (165951 bp)
Overview 1 RT 1: 156454-160718 bp Neighborhood of RT #1 [156454, 160732] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 156454-156894 bp Feature: gene Location: 157002-157367 bp Feature: gene Location: 158371-159480 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 158548-159232 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15 85 48-15 9232 bp Feature: gene Location: 159753-160109 bp Feature: domain Description: Avd_like Location: 159780-160083 bp Feature: domain Description: Avd_like Location: 15 9780-160083 bp Feature: gene Location: 160148-160732 bp Feature: domain Description: DUF1566 Location: 160394-160718 bp Feature: domain Description: DUF15 66 Location: 160394-160718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: NFGQ01000090.1 Pseudomonas aeruginosa strain S143_C02_RS S143_C02_RS_NODE_90_length_2426, whole genome shotgun sequence (2426 bp)
Overview 1 RT 1: 621-2292 bp Neighborhood of RT #1 [621, 2339] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 621-2339 bp Feature: RT Description: RVT_N Location: 678-915 bp Feature: RT Description: RVT_N Location: 6 78-915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 966-1617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96 6 -16 17 bp Feature: domain Description: GIIM Note: maturase Location: 1671-1902 bp Feature: domain Description: GIIM Note: maturase Location: 16 71-1902 bp Feature: domain Description: HNHc Note: nucleases Location: 2136-2292 bp Feature: domain Description: HNHc Note: nucleases Location: 2136 -2292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)