myRT

myRT report for GCA_002136535.1_ASM213653v1

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Seq: NFGU01000006.1 Pseudomonas aeruginosa strain S57_C01_BS S57_C01_BS_NODE_6_length_211530, whole genome shotgun sequence (211530 bp)
Overview 1 RT 1: 62514-70713 bp 2 RT 2: 86978-97277 bp Neighborhood of RT #1 [62514, 70721] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [86978, 97288] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 62514-63530 bp Feature: domain Description: COG3178 Location: 62517-63516 bp Feature: domain Description: COG31 78 Location: 6251 7-6351 6 bp Feature: gene Location: 64403-64615 bp Feature: gene Location: 64802-66514 bp Feature: RT Description: RVT_N Location: 64859-65102 bp Feature: RT Description: RVT_N Location: 64859-651 02 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65147-65780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 651 47-65780 bp Feature: domain Description: YkfC Location: 65993-66143 bp Feature: domain Description: YkfC Location: 65993-661 43 bp Feature: domain Description: HNH Note: nucleases Location: 66320-66458 bp Feature: domain Description: HNH Note: nucleases Location: 66320-66458 bp Feature: gene Location: 66647-69448 bp Feature: domain Description: LptD Location: 66842-69434 bp Feature: domain Description: LptD Location: 66842-69434 bp Feature: gene Location: 69429-70721 bp Feature: domain Description: PRK10770 Location: 69519-70713 bp Feature: domain Description: PRK1 0770 Location: 6951 9-7071 3 bp Feature: gene Location: 86978-88831 bp Feature: domain Description: PRK05658 Location: 86990-88829 bp Feature: domain Description: PRK05658 Location: 86990-88829 bp Feature: gene Location: 88938-92675 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 89046-89703 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 89046-89703 bp Feature: domain Description: PRK09776 Location: 89916-90387 bp Feature: domain Description: PRK09776 Location: 8991 6-90387 bp Feature: domain Description: PAS Location: 90444-90969 bp Feature: domain Description: PAS Location: 90444-90969 bp Feature: domain Description: PRK10060 Location: 90978-92625 bp Feature: domain Description: PRK1 0060 Location: 90978-92625 bp Feature: gene Location: 93756-95441 bp Feature: RT Description: RVT_N Location: 93813-94053 bp Feature: RT Description: RVT_N Location: 9381 3-94053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94101-94737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 941 01 -94737 bp Feature: domain Description: GIIM Note: maturase Location: 94791-95022 bp Feature: domain Description: GIIM Note: maturase Location: 94791 -95022 bp Feature: domain Description: HNH Note: nucleases Location: 95274-95412 bp Feature: domain Description: HNH Note: nucleases Location: 95274-9541 2 bp Feature: gene Location: 95744-95905 bp Feature: gene Location: 96167-97288 bp Feature: domain Description: COG3177 Location: 96185-97277 bp Feature: domain Description: COG31 77 Location: 961 85-97277 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )