myRT

myRT report for GCA_002140135.1_ASM214013v1

Download annotations/find similar RTs

Seq: MSMQ01000054.1 Klebsiella pneumoniae strain WM-Tun-3771 NODE_78_length_10756_cov_14.140852, whole genome shotgun sequence (10794 bp)
Overview 1 RT 1: 502-3299 bp Neighborhood of RT #1 [502, 3301] RVT-Retrons HTH_XRE DinI Feature: gene Location: 502-696 bp Feature: gene Location: 695-1126 bp Feature: gene Location: 1265-2215 bp Ori: OTP64281.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1445-1988 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 445-1 988 bp Feature: gene Location: 2193-2501 bp Ori: OTP64282.1 Feature: domain Description: HTH_XRE Location: 2205-2370 bp Feature: domain Description: HTH_XRE Location: 2205-2370 bp Feature: gene Location: 3122-3301 bp Ori: OTP64291.1 Feature: domain Description: DinI Location: 3125-3299 bp Feature: domain Description: DinI Location: 31 25-3299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), DinI (pfam06183)

Seq: MSMQ01000557.1 Klebsiella pneumoniae strain WM-Tun-3771 NODE_949_length_2343_cov_11.868117, whole genome shotgun sequence (2381 bp)
Overview 1 RT 1: 35-2368 bp Neighborhood of RT #1 [35, 2370] RVT-UG11 PRK09951 PRK15110 Feature: gene Location: 35-331 bp Ori: OTP60594.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 38-152 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 38-152 bp Feature: gene Location: 532-1200 bp Ori: OTP60592.1 Feature: domain Description: PRK09951 Location: 535-1198 bp Feature: domain Description: PRK09951 Location: 535-1198 bp Feature: gene Location: 1405-2370 bp Ori: OTP60593.1 Feature: domain Description: PRK15110 Location: 1408-2368 bp Feature: domain Description: PRK15110 Location: 1408-2 368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11, PRK09951 (hypothetical protein; Provisional), PRK15110 (peptide ABC transporter permease SapB)

Seq: MSMQ01000061.1 Klebsiella pneumoniae strain WM-Tun-3771 NODE_96_length_1957_cov_225.448639, whole genome shotgun sequence (1995 bp)
Overview 1 RT 1: 847-1546 bp Neighborhood of RT #1 [847, 1986] RVT-Retrons Feature: gene Location: 847-1986 bp Ori: OTP64226.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 991-1546 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 991-1546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: MSMQ01000302.1 Klebsiella pneumoniae strain WM-Tun-3771 NODE_535_length_1905_cov_15.246194, whole genome shotgun sequence (1943 bp)
Overview 1 RT 1: 1-1943 bp Neighborhood of RT #1 [1, 1943] RVT-UG11 Feature: gene Location: 1-390 bp Ori: OTP62034.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 274-391 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 274 -391 bp Feature: gene Location: 650-907 bp Feature: gene Location: 1063-1943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11

Seq: MSMQ01000177.1 Klebsiella pneumoniae strain WM-Tun-3771 NODE_270_length_2166_cov_35.673592, whole genome shotgun sequence (2204 bp)
Overview 1 RT 1: 28-2203 bp Neighborhood of RT #1 [28, 2204] RVT-GII Zn_Tnp_IS1 Feature: gene Location: 28-143 bp Feature: gene Location: 208-459 bp Feature: gene Location: 459-1943 bp Ori: OTP62929.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 861-1551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 861-15 5 1 bp Feature: gene Location: 1936-2061 bp Feature: gene Location: 2095-2204 bp Ori: OTP62931.1 Feature: domain Description: Zn_Tnp_IS1 Location: 2101-2203 bp Feature: domain Description: Zn_Tnp_IS1 Location: 2101-2203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Zn_Tnp_IS1 (pfam03811)