myRT

myRT report for GCA_002146395.1_ASM214639v1

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Seq: NFCJ01000133.1 Bacillus thuringiensis serovar silo strain BGSC 4AG1 4AG1_contig000133, whole genome shotgun sequence (67140 bp)
Overview 1 RT 1: 599-6803 bp 2 RT 2: 61552-67009 bp Neighborhood of RT #1 [599, 6803] RVT-GII Intron_maturas2 HNHc Neighborhood of RT #2 [61552, 67035] TcpE VirB4_CagE AAA_10 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 599-2407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863-1688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863-1 688 bp Feature: domain Description: Intron_maturas2 Location: 1760-2075 bp Feature: domain Description: Intron_maturas2 Location: 1 760-2075 bp Feature: domain Description: HNHc Note: nucleases Location: 2234-2381 bp Feature: domain Description: HNHc Note: nucleases Location: 2234-2381 bp Feature: gene Location: 2656-3171 bp Feature: gene Location: 3168-6803 bp Feature: gene Location: 61552-62085 bp Feature: domain Description: TcpE Location: 61597-61885 bp Feature: domain Description: TcpE Location: 61 597-61 885 bp Feature: gene Location: 62157-64661 bp Feature: domain Description: VirB4_CagE Location: 62196-62541 bp Feature: domain Description: VirB4_CagE Location: 621 96-62541 bp Feature: domain Description: AAA_10 Location: 63570-64635 bp Feature: domain Description: AAA_1 0 Location: 63570-64635 bp Feature: gene Location: 65227-67035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65491-66316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65491 -6631 6 bp Feature: domain Description: Intron_maturas2 Location: 66388-66703 bp Feature: domain Description: Intron_maturas2 Location: 66388-66703 bp Feature: domain Description: HNHc Note: nucleases Location: 66862-67009 bp Feature: domain Description: HNHc Note: nucleases Location: 66862-67009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TcpE (pfam12648), VirB4_CagE (TIGR00929), AAA_10 (pfam12846)

Seq: NFCJ01000128.1 Bacillus thuringiensis serovar silo strain BGSC 4AG1 4AG1_contig000128, whole genome shotgun sequence (111549 bp)
Overview 1 RT 1: 77351-81824 bp Neighborhood of RT #1 [77351, 81847] DEDD_Tnp_IS110 COG3547 RVT-GII PRK10420 DUF4870 Feature: gene Location: 77351-77653 bp Feature: gene Location: 78067-79212 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 78082-78556 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 78082 -78556 bp Feature: domain Description: COG3547 Location: 78808-79180 bp Feature: domain Description: COG3547 Location: 78808-79180 bp Feature: gene Location: 79142-79372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79190-79310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79190-79310 bp Feature: gene Location: 79572-81233 bp Feature: domain Description: PRK10420 Location: 79575-81231 bp Feature: domain Description: PRK1042 0 Location: 79575-812 31 bp Feature: gene Location: 81530-81847 bp Feature: domain Description: DUF4870 Location: 81548-81824 bp Feature: domain Description: DUF4870 Location: 81548-8182 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), COG3547 (Transposase ), RVT-GII, PRK10420 (L-lactate permease; Provisional), DUF4870 (pfam09685)

Seq: NFCJ01000023.1 Bacillus thuringiensis serovar silo strain BGSC 4AG1 4AG1_contig000023, whole genome shotgun sequence (6546 bp)
Overview 1 RT 1: 881-5255 bp Neighborhood of RT #1 [881, 5255] RVT-GII group_II_RT_mat HNHc SR_ResInv HTH_49 Feature: gene Location: 881-1108 bp Feature: gene Location: 1301-1735 bp Feature: gene Location: 1909-3750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2179-2989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2179-2989 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3193-3334 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3 193 -3 3 3 4 bp Feature: domain Description: HNHc Note: nucleases Location: 3535-3685 bp Feature: domain Description: HNHc Note: nucleases Location: 3 53 5-3 685 bp Feature: gene Location: 4306-4890 bp Feature: domain Description: SR_ResInv Location: 4312-4684 bp Feature: domain Description: SR_ResInv Location: 43 12-4684 bp Feature: domain Description: HTH_49 Location: 4759-4843 bp Feature: domain Description: HTH_49 Location: 4759-4843 bp Feature: gene Location: 5016-5255 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), HNHc (smart00507), SR_ResInv (cd03768), HTH_49 (pfam18010)

Seq: NFCJ01000053.1 Bacillus thuringiensis serovar silo strain BGSC 4AG1 4AG1_contig000053, whole genome shotgun sequence (4194 bp)
Overview 1 RT 1: 1056-4142 bp Neighborhood of RT #1 [1056, 4147] RVT-GII HNHc spore_ger_x_C Feature: gene Location: 1056-2882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1356-2061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1356-2061 bp Feature: domain Description: HNHc Note: nucleases Location: 2682-2772 bp Feature: domain Description: HNHc Note: nucleases Location: 2682-2772 bp Feature: gene Location: 3071-4147 bp Feature: domain Description: spore_ger_x_C Location: 3092-4142 bp Feature: domain Description: spore_ger_x_C Location: 3092-4 14 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), spore_ger_x_C (TIGR02887)

Seq: NFCJ01000075.1 Bacillus thuringiensis serovar silo strain BGSC 4AG1 4AG1_contig000075, whole genome shotgun sequence (7425 bp)
Overview 1 RT 1: 2667-7425 bp Neighborhood of RT #1 [2667, 7425] RVT-GII GIIM RVT-GII GIIM RVT-GII Feature: gene Location: 2667-2849 bp Feature: gene Location: 2910-3239 bp Feature: gene Location: 3377-3967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3380-3509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3380-35 09 bp Feature: domain Description: GIIM Note: maturase Location: 3569-3776 bp Feature: domain Description: GIIM Note: maturase Location: 35 69-3776 bp Feature: gene Location: 4037-5299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4241-4898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4241-4898 bp Feature: domain Description: GIIM Note: maturase Location: 4979-5207 bp Feature: domain Description: GIIM Note: maturase Location: 4979-5 207 bp Feature: gene Location: 5847-6518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6048-6519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6048-65 19 bp Feature: gene Location: 7155-7425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NFCJ01000018.1 Bacillus thuringiensis serovar silo strain BGSC 4AG1 4AG1_contig000018, whole genome shotgun sequence (9089 bp)
Overview 1 RT 1: 609-3875 bp Neighborhood of RT #1 [609, 3875] RVT-GII Intron_maturas2 HNHc TraG-D_C Feature: gene Location: 609-2417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 873-1695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 873-16 95 bp Feature: domain Description: Intron_maturas2 Location: 1767-2067 bp Feature: domain Description: Intron_maturas2 Location: 176 7-206 7 bp Feature: domain Description: HNHc Note: nucleases Location: 2232-2388 bp Feature: domain Description: HNHc Note: nucleases Location: 2232-2388 bp Feature: gene Location: 2522-3097 bp Feature: domain Description: TraG-D_C Location: 2525-2849 bp Feature: domain Description: TraG-D_C Location: 2525-2849 bp Feature: gene Location: 3348-3875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFCJ01000084.1 Bacillus thuringiensis serovar silo strain BGSC 4AG1 4AG1_contig000084, whole genome shotgun sequence (8994 bp)
Overview 1 RT 1: 2457-8860 bp Neighborhood of RT #1 [2457, 8889] YqbO YqbO phi3626_gp14_N RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2457-6101 bp Feature: domain Description: YqbO Location: 2460-4524 bp Feature: domain Description: YqbO Location: 2460-4524 bp Feature: domain Description: YqbO Location: 4794-5346 bp Feature: domain Description: YqbO Location: 47 94-5346 bp Feature: gene Location: 6143-6505 bp Feature: domain Description: phi3626_gp14_N Location: 6155-6497 bp Feature: domain Description: phi3626_gp14_N Location: 6155-6497 bp Feature: gene Location: 7081-8889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7345-8167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 345-8167 bp Feature: domain Description: Intron_maturas2 Location: 8239-8539 bp Feature: domain Description: Intron_maturas2 Location: 8239-8539 bp Feature: domain Description: HNHc Note: nucleases Location: 8704-8860 bp Feature: domain Description: HNHc Note: nucleases Location: 87 04-8860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YqbO (COG5280), phi3626_gp14_N (TIGR01633), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFCJ01000044.1 Bacillus thuringiensis serovar silo strain BGSC 4AG1 4AG1_contig000044, whole genome shotgun sequence (6375 bp)
Overview 1 RT 1: 19-5738 bp Neighborhood of RT #1 [19, 5767] put_anti_recept SMC_prok_B Smc Sipho_tail RVT-GII Intron_maturas2 HNHc Feature: gene Location: 19-2712 bp Feature: domain Description: put_anti_recept Location: 106-1075 bp Feature: domain Description: put_anti_recept Location: 106-1075 bp Feature: domain Description: SMC_prok_B Location: 1471-1909 bp Feature: domain Description: SMC_prok_B Location: 1471-1909 bp Feature: domain Description: Smc Location: 2395-2701 bp Feature: domain Description: Smc Location: 2395-2701 bp Feature: gene Location: 2709-3866 bp Feature: domain Description: Sipho_tail Location: 2727-3861 bp Feature: domain Description: Sipho_tail Location: 2727-38 61 bp Feature: gene Location: 3959-5767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4223-5045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4223-5045 bp Feature: domain Description: Intron_maturas2 Location: 5117-5417 bp Feature: domain Description: Intron_maturas2 Location: 5117-5417 bp Feature: domain Description: HNHc Note: nucleases Location: 5582-5738 bp Feature: domain Description: HNHc Note: nucleases Location: 558 2-5738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT put_anti_recept (TIGR01665), SMC_prok_B (TIGR02168), Smc (COG1196), Sipho_tail (pfam05709), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFCJ01000134.1 Bacillus thuringiensis serovar silo strain BGSC 4AG1 4AG1_contig000134, whole genome shotgun sequence (48361 bp)
Overview 1 RT 1: 599-5891 bp 2 RT 2: 42882-48230 bp Neighborhood of RT #1 [599, 5891] RVT-GII Intron_maturas2 HNHc Neighborhood of RT #2 [42882, 48256] TcpE AAA_10 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 599-2407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863-1688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863-1688 bp Feature: domain Description: Intron_maturas2 Location: 1760-2075 bp Feature: domain Description: Intron_maturas2 Location: 1760-2075 bp Feature: domain Description: HNHc Note: nucleases Location: 2234-2381 bp Feature: domain Description: HNHc Note: nucleases Location: 2234-2381 bp Feature: gene Location: 2680-3189 bp Feature: gene Location: 3186-5891 bp Feature: gene Location: 42882-43430 bp Feature: domain Description: TcpE Location: 42954-43233 bp Feature: domain Description: TcpE Location: 429 54-43233 bp Feature: gene Location: 43390-45882 bp Feature: domain Description: AAA_10 Location: 44800-45856 bp Feature: domain Description: AAA_10 Location: 44800-45856 bp Feature: gene Location: 46448-48256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46712-47537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46712-47537 bp Feature: domain Description: Intron_maturas2 Location: 47609-47924 bp Feature: domain Description: Intron_maturas2 Location: 47609 -479 24 bp Feature: domain Description: HNHc Note: nucleases Location: 48083-48230 bp Feature: domain Description: HNHc Note: nucleases Location: 48083-48230 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TcpE (pfam12648), AAA_10 (pfam12846)

Seq: NFCJ01000117.1 Bacillus thuringiensis serovar silo strain BGSC 4AG1 4AG1_contig000117, whole genome shotgun sequence (32856 bp)
Overview 1 RT 1: 106-4182 bp Neighborhood of RT #1 [106, 4187] RVT-GII Intron_maturas2 HNHc T4SS-DNA_transf Maff2 Feature: gene Location: 106-1914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370-1192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370-1192 bp Feature: domain Description: Intron_maturas2 Location: 1264-1564 bp Feature: domain Description: Intron_maturas2 Location: 1264-1564 bp Feature: domain Description: HNHc Note: nucleases Location: 1729-1885 bp Feature: domain Description: HNHc Note: nucleases Location: 1729-1885 bp Feature: gene Location: 2523-3767 bp Feature: domain Description: T4SS-DNA_transf Location: 2946-3768 bp Feature: domain Description: T4SS-DNA_transf Location: 2946-3768 bp Feature: gene Location: 3972-4187 bp Feature: domain Description: Maff2 Location: 3975-4182 bp Feature: domain Description: Maff2 Location: 3975-4182 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), T4SS-DNA_transf (pfam02534), Maff2 (pfam12750)