myRT

myRT report for GCA_002146405.1_ASM214640v1

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Seq: NFCM01000040.1 Bacillus thuringiensis serovar sumiyoshiensis strain BGSC 4AO1 4AO1_contig000040, whole genome shotgun sequence (26830 bp)
Overview 1 RT 1: 588-5160 bp Neighborhood of RT #1 [588, 5160] RVT-GII Intron_maturas2 HNHc RimL Feature: gene Location: 588-2411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 852-1686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 852-1 686 bp Feature: domain Description: Intron_maturas2 Location: 1755-2094 bp Feature: domain Description: Intron_maturas2 Location: 1 755-2094 bp Feature: domain Description: HNHc Note: nucleases Location: 2232-2388 bp Feature: domain Description: HNHc Note: nucleases Location: 2232-2388 bp Feature: gene Location: 2909-3415 bp Feature: domain Description: RimL Location: 2918-3413 bp Feature: domain Description: RimL Location: 291 8-341 3 bp Feature: gene Location: 4768-5160 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RimL (COG1670), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFCM01000088.1 Bacillus thuringiensis serovar sumiyoshiensis strain BGSC 4AO1 4AO1_contig000088, whole genome shotgun sequence (35620 bp)
Overview 1 RT 1: 10590-20850 bp Neighborhood of RT #1 [10590, 21029] RVT-GII Intron_maturas2 HNHc RVT-GII GIIM TraG-D_C Ftsk_gamma Ftsk_gamma rpsA Feature: gene Location: 10590-11063 bp Feature: gene Location: 11081-12592 bp Feature: gene Location: 13184-15001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13454-14276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13454-142 76 bp Feature: domain Description: Intron_maturas2 Location: 14357-14651 bp Feature: domain Description: Intron_maturas2 Location: 14357-14651 bp Feature: domain Description: HNHc Note: nucleases Location: 14798-14972 bp Feature: domain Description: HNHc Note: nucleases Location: 14798-14972 bp Feature: gene Location: 15102-15308 bp Feature: gene Location: 15980-17854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16280-16985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 80-16985 bp Feature: domain Description: GIIM Note: maturase Location: 17099-17267 bp Feature: domain Description: GIIM Note: maturase Location: 17099-172 67 bp Feature: gene Location: 18087-19787 bp Feature: domain Description: TraG-D_C Location: 18099-18417 bp Feature: domain Description: TraG-D_C Location: 18099-18417 bp Feature: domain Description: Ftsk_gamma Location: 18777-18957 bp Feature: domain Description: Ftsk_gamma Location: 18777-18957 bp Feature: domain Description: Ftsk_gamma Location: 19110-19284 bp Feature: domain Description: Ftsk_gamma Location: 19110-192 84 bp Feature: gene Location: 20046-21029 bp Feature: domain Description: rpsA Location: 20313-20850 bp Feature: domain Description: rpsA Location: 2 0313-2 0850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), GIIM (pfam08388), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), rpsA (TIGR00717)

Seq: NFCM01000091.1 Bacillus thuringiensis serovar sumiyoshiensis strain BGSC 4AO1 4AO1_contig000091, whole genome shotgun sequence (388571 bp)
Overview 1 RT 1: 107532-111649 bp Neighborhood of RT #1 [107532, 111649] PRK03902 photo_TT_lyase RVT-GII Feature: gene Location: 107532-107960 bp Feature: domain Description: PRK03902 Location: 107535-107955 bp Feature: domain Description: PRK03 902 Location: 10753 5-107955 bp Feature: gene Location: 108105-109106 bp Feature: domain Description: photo_TT_lyase Location: 108153-109104 bp Feature: domain Description: photo_TT_lyase Location: 108153 -109104 bp Feature: gene Location: 109233-111164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109554-110289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109554-110289 bp Feature: gene Location: 111161-111364 bp Feature: gene Location: 111446-111649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03902 (transcriptional regulator MntR), photo_TT_lyase (TIGR04070), RVT-GII

Seq: NFCM01000063.1 Bacillus thuringiensis serovar sumiyoshiensis strain BGSC 4AO1 4AO1_contig000063, whole genome shotgun sequence (39047 bp)
Overview 1 RT 1: 7522-11825 bp Neighborhood of RT #1 [7522, 11825] PRTRC_ThiF RVT-GII Intron_maturas2 HNHc E1_enzyme_family Feature: gene Location: 7522-7893 bp Feature: gene Location: 7913-8464 bp Feature: domain Description: PRTRC_ThiF Location: 7982-8432 bp Feature: domain Description: PRTRC_ThiF Location: 7982-84 32 bp Feature: gene Location: 8719-10659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9049-9886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 904 9-9886 bp Feature: domain Description: Intron_maturas2 Location: 10024-10315 bp Feature: domain Description: Intron_maturas2 Location: 10024 -10315 bp Feature: domain Description: HNHc Note: nucleases Location: 10447-10606 bp Feature: domain Description: HNHc Note: nucleases Location: 104 4 7-10606 bp Feature: gene Location: 11228-11410 bp Feature: domain Description: E1_enzyme_family Location: 11276-11393 bp Feature: domain Description: E1_enzyme_family Location: 11276-11393 bp Feature: gene Location: 11430-11825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT E1_enzyme_family (cl22428), PRTRC_ThiF (TIGR03736), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFCM01000080.1 Bacillus thuringiensis serovar sumiyoshiensis strain BGSC 4AO1 4AO1_contig000080, whole genome shotgun sequence (218211 bp)
Overview 1 RT 1: 113265-120875 bp Neighborhood of RT #1 [113265, 121372] HTH_XRE ABCF_EF-3 DUF4435 RVT-Retrons INT_tnpB_C_Tn554 Feature: gene Location: 113265-113498 bp Feature: domain Description: HTH_XRE Location: 113289-113460 bp Feature: domain Description: HTH_XRE Location: 113289-113460 bp Feature: gene Location: 114572-116566 bp Feature: domain Description: ABCF_EF-3 Location: 115079-115709 bp Feature: domain Description: ABCF_EF-3 Location: 115 079-115 709 bp Feature: domain Description: DUF4435 Location: 115835-116414 bp Feature: domain Description: DUF4435 Location: 115 835 -116414 bp Feature: gene Location: 116956-118713 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 117082-117673 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 117082-117673 bp Feature: gene Location: 119134-119823 bp Feature: gene Location: 119810-121372 bp Feature: domain Description: INT_tnpB_C_Tn554 Location: 120386-120875 bp Feature: domain Description: INT_tnpB_C_Tn5 5 4 Location: 120386-120875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), ABCF_EF-3 (cd03221), DUF4435 (pfam14491), RVT-Retrons, INT_tnpB_C_Tn554 (cd01187)

Seq: NFCM01000038.1 Bacillus thuringiensis serovar sumiyoshiensis strain BGSC 4AO1 4AO1_contig000038, whole genome shotgun sequence (6337 bp)
Overview 1 RT 1: 117-6337 bp Neighborhood of RT #1 [117, 6337] RVT-GII Intron_maturas2 HNHc CwlT_like Feature: gene Location: 117-1940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381-1215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381-1215 bp Feature: domain Description: Intron_maturas2 Location: 1284-1623 bp Feature: domain Description: Intron_maturas2 Location: 1284-16 23 bp Feature: domain Description: HNHc Note: nucleases Location: 1761-1917 bp Feature: domain Description: HNHc Note: nucleases Location: 176 1-1917 bp Feature: gene Location: 2516-3820 bp Feature: domain Description: CwlT_like Location: 3368-3809 bp Feature: domain Description: CwlT_like Location: 336 8-3809 bp Feature: gene Location: 3817-6337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), CwlT_like

Seq: NFCM01000039.1 Bacillus thuringiensis serovar sumiyoshiensis strain BGSC 4AO1 4AO1_contig000039, whole genome shotgun sequence (65690 bp)
Overview 1 RT 1: 117-3593 bp Neighborhood of RT #1 [117, 3604] RVT-GII Intron_maturas2 HNHc Lysozyme_like YxeA Feature: gene Location: 117-1940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381-1215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381-1215 bp Feature: domain Description: Intron_maturas2 Location: 1284-1623 bp Feature: domain Description: Intron_maturas2 Location: 1284-1623 bp Feature: domain Description: HNHc Note: nucleases Location: 1761-1917 bp Feature: domain Description: HNHc Note: nucleases Location: 17 61-1917 bp Feature: gene Location: 2516-3097 bp Feature: domain Description: Lysozyme_like Location: 2651-3086 bp Feature: domain Description: Lysozyme_like Location: 2651-3086 bp Feature: gene Location: 3473-3604 bp Feature: domain Description: YxeA Location: 3503-3593 bp Feature: domain Description: YxeA Location: 3503-3593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Lysozyme_like (pfam13702), YxeA (COG5294)

Seq: NFCM01000041.1 Bacillus thuringiensis serovar sumiyoshiensis strain BGSC 4AO1 4AO1_contig000041, whole genome shotgun sequence (4925 bp)
Overview 1 RT 1: 588-4038 bp Neighborhood of RT #1 [588, 4038] RVT-GII Intron_maturas2 HNHc NlpD Spr Feature: gene Location: 588-2411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 852-1686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8 52-168 6 bp Feature: domain Description: Intron_maturas2 Location: 1755-2094 bp Feature: domain Description: Intron_maturas2 Location: 1755-2094 bp Feature: domain Description: HNHc Note: nucleases Location: 2232-2388 bp Feature: domain Description: HNHc Note: nucleases Location: 2232-238 8 bp Feature: gene Location: 2571-3446 bp Feature: domain Description: NlpD Location: 2586-3015 bp Feature: domain Description: NlpD Location: 258 6-3015 bp Feature: domain Description: Spr Location: 3051-3387 bp Feature: domain Description: Spr Location: 3051-338 7 bp Feature: gene Location: 3463-4038 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)