myRT

myRT report for GCA_002146725.1_ASM214672v1

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Seq: NFDG01000008.1 Bacillus thuringiensis serovar navarrensis strain BGSC 4BM1 4BM1_contig000008, whole genome shotgun sequence (8336 bp)
Overview 1 RT 1: 887-6983 bp Neighborhood of RT #1 [887, 7078] Spr RVT-GII Intron_maturas2 HNHc Lysozyme_like TraC-F-type TraC-F-type Feature: gene Location: 887-1465 bp Feature: gene Location: 1493-1969 bp Feature: domain Description: Spr Location: 1571-1946 bp Feature: domain Description: Spr Location: 1 571 -1 946 bp Feature: gene Location: 2080-3903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2344-3175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2344-31 75 bp Feature: domain Description: Intron_maturas2 Location: 3250-3595 bp Feature: domain Description: Intron_maturas2 Location: 3250-3595 bp Feature: domain Description: HNHc Note: nucleases Location: 3724-3877 bp Feature: domain Description: HNHc Note: nucleases Location: 3724-3877 bp Feature: gene Location: 4474-5136 bp Feature: domain Description: Lysozyme_like Location: 4663-5125 bp Feature: domain Description: Lysozyme_like Location: 4663-51 25 bp Feature: gene Location: 5141-7078 bp Feature: domain Description: TraC-F-type Location: 5822-6101 bp Feature: domain Description: TraC-F-type Location: 5822-61 01 bp Feature: domain Description: TraC-F-type Location: 6662-6983 bp Feature: domain Description: TraC-F-type Location: 6662-6983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Lysozyme_like (pfam13702), TraC-F-type (TIGR02746)

Seq: NFDG01000073.1 Bacillus thuringiensis serovar navarrensis strain BGSC 4BM1 4BM1_contig000073, whole genome shotgun sequence (177637 bp)
Overview 1 RT 1: 105654-110614 bp Neighborhood of RT #1 [105654, 110652] AzlC TrmB RVT-GII GIIM FMN_nitrolo Feature: gene Location: 105654-106382 bp Feature: domain Description: AzlC Location: 105690-106353 bp Feature: domain Description: AzlC Location: 105690-106353 bp Feature: gene Location: 106372-107208 bp Feature: domain Description: TrmB Location: 106375-107008 bp Feature: domain Description: TrmB Location: 106375-107008 bp Feature: gene Location: 107492-108790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107798-108428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107798-10842 8 bp Feature: domain Description: GIIM Note: maturase Location: 108509-108734 bp Feature: domain Description: GIIM Note: maturase Location: 108509-108734 bp Feature: gene Location: 108812-109075 bp Feature: gene Location: 109354-110652 bp Feature: domain Description: FMN_nitrolo Location: 109405-110614 bp Feature: domain Description: FMN_nitrolo Location: 109405-110614 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AzlC (pfam03591), TrmB (pfam01978), RVT-GII, GIIM (pfam08388), FMN_nitrolo (TIGR03860)

Seq: NFDG01000012.1 Bacillus thuringiensis serovar navarrensis strain BGSC 4BM1 4BM1_contig000012, whole genome shotgun sequence (16049 bp)
Overview 1 RT 1: 8713-13604 bp Neighborhood of RT #1 [8713, 13604] PinE RVT_N RVT-GII GIIM HNHc T_den_put_tspse Feature: gene Location: 8713-9273 bp Feature: domain Description: PinE Location: 8725-9271 bp Feature: domain Description: PinE Location: 8725-9271 bp Feature: gene Location: 9355-9614 bp Feature: gene Location: 10192-12018 bp Feature: RT Description: RVT_N Location: 10240-10483 bp Feature: RT Description: RVT_N Location: 10240-10483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10540-11209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10540-11209 bp Feature: domain Description: GIIM Note: maturase Location: 11269-11503 bp Feature: domain Description: GIIM Note: maturase Location: 11269-11503 bp Feature: domain Description: HNHc Note: nucleases Location: 11701-11869 bp Feature: domain Description: HNHc Note: nucleases Location: 11701-11869 bp Feature: gene Location: 11993-12736 bp Feature: domain Description: T_den_put_tspse Location: 12098-12728 bp Feature: domain Description: T_den_put_tspse Location: 12098-12728 bp Feature: gene Location: 13305-13604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), T_den_put_tspse (TIGR01784), PinE (COG1961)

Seq: NFDG01000132.1 Bacillus thuringiensis serovar navarrensis strain BGSC 4BM1 4BM1_contig000132, whole genome shotgun sequence (97318 bp)
Overview 1 RT 1: 1-5824 bp Neighborhood of RT #1 [1, 5856] InsE RVT-GII HNHc DacC Feature: gene Location: 1-524 bp Feature: gene Location: 595-915 bp Feature: domain Description: InsE Location: 622-775 bp Feature: domain Description: InsE Location: 622-775 bp Feature: gene Location: 1886-3703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2186-2885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2186-2885 bp Feature: domain Description: HNHc Note: nucleases Location: 3458-3593 bp Feature: domain Description: HNHc Note: nucleases Location: 34 58-3593 bp Feature: gene Location: 4200-4419 bp Feature: gene Location: 4549-5856 bp Feature: domain Description: DacC Location: 4591-5824 bp Feature: domain Description: DacC Location: 4 591-5824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), DacC (COG1686), InsE (COG2963)

Seq: NFDG01000091.1 Bacillus thuringiensis serovar navarrensis strain BGSC 4BM1 4BM1_contig000091, whole genome shotgun sequence (11253 bp)
Overview 1 RT 1: 476-6506 bp Neighborhood of RT #1 [476, 6667] TraG-D_C RVT-GII Intron_maturas2 HNHc TraG_VirD4 VirD4 Collagen Collagen Collagen Feature: gene Location: 476-685 bp Feature: gene Location: 743-1711 bp Feature: domain Description: TraG-D_C Location: 752-1064 bp Feature: domain Description: TraG-D_C Location: 75 2-1064 bp Feature: gene Location: 1819-3627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2083-2905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2083-2905 bp Feature: domain Description: Intron_maturas2 Location: 2977-3277 bp Feature: domain Description: Intron_maturas2 Location: 2977-3277 bp Feature: domain Description: HNHc Note: nucleases Location: 3445-3598 bp Feature: domain Description: HNHc Note: nucleases Location: 3445 -35 98 bp Feature: gene Location: 4177-5835 bp Feature: domain Description: TraG_VirD4 Location: 4645-5347 bp Feature: domain Description: TraG_VirD4 Location: 4645 -5 347 bp Feature: domain Description: VirD4 Location: 5614-5773 bp Feature: domain Description: VirD4 Location: 5 614-5 773 bp Feature: gene Location: 5918-6667 bp Feature: domain Description: Collagen Location: 5921-6095 bp Feature: domain Description: Collagen Location: 5 921-6095 bp Feature: domain Description: Collagen Location: 6218-6221 bp Feature: domain Description: Collagen Location: 6218-6221 bp Feature: domain Description: Collagen Location: 6353-6506 bp Feature: domain Description: Collagen Location: 635 3-65 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TraG_VirD4, VirD4 (COG3505)

Seq: NFDG01000104.1 Bacillus thuringiensis serovar navarrensis strain BGSC 4BM1 4BM1_contig000104, whole genome shotgun sequence (48403 bp)
Overview 1 RT 1: 121-5977 bp Neighborhood of RT #1 [121, 6012] COG4932 SpaA SpaA RVT-GII HNHc TQXA_dom HTH_XRE Feature: gene Location: 121-579 bp Feature: gene Location: 738-2594 bp Feature: domain Description: COG4932 Location: 1188-1731 bp Feature: domain Description: COG4932 Location: 1188-1731 bp Feature: domain Description: SpaA Location: 1818-2010 bp Feature: domain Description: SpaA Location: 1818-2010 bp Feature: domain Description: SpaA Location: 2088-2286 bp Feature: domain Description: SpaA Location: 2088-2286 bp Feature: gene Location: 2684-4549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3005-3731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3005-3731 bp Feature: domain Description: HNHc Note: nucleases Location: 4280-4421 bp Feature: domain Description: HNHc Note: nucleases Location: 4280-4421 bp Feature: gene Location: 5276-5647 bp Feature: domain Description: TQXA_dom Location: 5549-5633 bp Feature: domain Description: TQXA_dom Location: 5549-56 33 bp Feature: gene Location: 5803-6012 bp Feature: domain Description: HTH_XRE Location: 5815-5977 bp Feature: domain Description: HTH_XRE Location: 5815-5977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), TQXA_dom (TIGR03934), HTH_XRE (smart00530), COG4932 (Uncharacterized surface anchored protein ), SpaA (pfam17802)