myRT

myRT report for GCA_002146755.1_ASM214675v1

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Seq: NFDH01000103.1 Bacillus thuringiensis serovar kim strain BGSC 4BP1 4BP1_contig000103, whole genome shotgun sequence (26541 bp)
Overview 1 RT 1: 622-5535 bp 2 RT 2: 23387-26541 bp Neighborhood of RT #1 [622, 5714] RVT-GII Intron_maturas2 HNHc TraG-D_C Ftsk_gamma Ftsk_gamma rpsA Neighborhood of RT #2 [23387, 26541] RVT-GII Feature: gene Location: 622-2439 bp Ori: OTY00418.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 892-1717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 892-1 71 7 bp Feature: domain Description: Intron_maturas2 Location: 1798-2089 bp Feature: domain Description: Intron_maturas2 Location: 1 798-2089 bp Feature: domain Description: HNHc Note: nucleases Location: 2236-2413 bp Feature: domain Description: HNHc Note: nucleases Location: 2236-241 3 bp Feature: gene Location: 2690-4495 bp Ori: OTY00435.1 Feature: domain Description: TraG-D_C Location: 2693-3044 bp Feature: domain Description: TraG-D_C Location: 2693-3044 bp Feature: domain Description: Ftsk_gamma Location: 3479-3650 bp Feature: domain Description: Ftsk_gamma Location: 3479-3650 bp Feature: domain Description: Ftsk_gamma Location: 3818-3956 bp Feature: domain Description: Ftsk_gamma Location: 381 8-3956 bp Feature: gene Location: 4731-5714 bp Ori: OTY00419.1 Feature: domain Description: rpsA Location: 4998-5535 bp Feature: domain Description: rpsA Location: 4998-5535 bp Feature: gene Location: 23387-23614 bp Feature: gene Location: 24636-24836 bp Feature: gene Location: 24833-26110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25154-25889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251 54-25889 bp Feature: gene Location: 26101-26541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), rpsA (TIGR00717)

Seq: NFDH01000057.1 Bacillus thuringiensis serovar kim strain BGSC 4BP1 4BP1_contig000057, whole genome shotgun sequence (23219 bp)
Overview 1 RT 1: 622-5473 bp Neighborhood of RT #1 [622, 5473] RVT-GII Intron_maturas2 HNHc TraG-D_C Ftsk_gamma Feature: gene Location: 622-2439 bp Ori: OTY11430.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 892-1717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 892 -1717 bp Feature: domain Description: Intron_maturas2 Location: 1798-2089 bp Feature: domain Description: Intron_maturas2 Location: 1798-2 089 bp Feature: domain Description: HNHc Note: nucleases Location: 2236-2413 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 36-2 413 bp Feature: gene Location: 2567-4396 bp Ori: OTY11431.1 Feature: domain Description: TraG-D_C Location: 2684-3041 bp Feature: domain Description: TraG-D_C Location: 2 684-3041 bp Feature: domain Description: Ftsk_gamma Location: 3449-3629 bp Feature: domain Description: Ftsk_gamma Location: 3449-362 9 bp Feature: gene Location: 4703-5473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TraG-D_C (pfam12696), Ftsk_gamma (smart00843)

Seq: NFDH01000088.1 Bacillus thuringiensis serovar kim strain BGSC 4BP1 4BP1_contig000088, whole genome shotgun sequence (226796 bp)
Overview 1 RT 1: 182580-190625 bp Neighborhood of RT #1 [182580, 190625] HTH_XRE RVT-UG28 Feature: gene Location: 182580-183839 bp Ori: OTY05650.1 Feature: domain Description: HTH_XRE Location: 182610-182745 bp Feature: domain Description: HTH_XRE Location: 182610-182745 bp Feature: gene Location: 184505-184995 bp Feature: gene Location: 185333-186832 bp Ori: OTY05651.1 Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 185621-186257 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 185621-186257 bp Feature: gene Location: 187361-189472 bp Feature: gene Location: 190428-190625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-UG28

Seq: NFDH01000055.1 Bacillus thuringiensis serovar kim strain BGSC 4BP1 4BP1_contig000055, whole genome shotgun sequence (26414 bp)
Overview 1 RT 1: 104-4506 bp Neighborhood of RT #1 [104, 4506] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 104-1921 bp Ori: OTY11542.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374 -1199 bp Feature: domain Description: Intron_maturas2 Location: 1280-1571 bp Feature: domain Description: Intron_maturas2 Location: 1280-1571 bp Feature: domain Description: HNHc Note: nucleases Location: 1718-1895 bp Feature: domain Description: HNHc Note: nucleases Location: 1718-1895 bp Feature: gene Location: 2507-4018 bp Feature: gene Location: 4036-4506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDH01000056.1 Bacillus thuringiensis serovar kim strain BGSC 4BP1 4BP1_contig000056, whole genome shotgun sequence (6592 bp)
Overview 1 RT 1: 104-4425 bp Neighborhood of RT #1 [104, 4425] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 104-1921 bp Ori: OTY11530.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1199 bp Feature: domain Description: Intron_maturas2 Location: 1280-1571 bp Feature: domain Description: Intron_maturas2 Location: 1280-15 71 bp Feature: domain Description: HNHc Note: nucleases Location: 1718-1895 bp Feature: domain Description: HNHc Note: nucleases Location: 1718-1895 bp Feature: gene Location: 2507-4018 bp Feature: gene Location: 4036-4425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDH01000064.1 Bacillus thuringiensis serovar kim strain BGSC 4BP1 4BP1_contig000064, whole genome shotgun sequence (40031 bp)
Overview 1 RT 1: 1662-6385 bp Neighborhood of RT #1 [1662, 6510] DDE_Tnp_1 RVT-GII GIIM DDE_Tnp_1 Replic_Relax Replic_Relax Feature: gene Location: 1662-2765 bp Feature: domain Description: DDE_Tnp_1 Location: 2079-2766 bp Feature: domain Description: DDE_Tnp_1 Location: 2079-276 6 bp Feature: gene Location: 2932-3111 bp Feature: gene Location: 3287-4594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3572-4208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3572-4208 bp Feature: domain Description: GIIM Note: maturase Location: 4286-4511 bp Feature: domain Description: GIIM Note: maturase Location: 4286 -4511 bp Feature: gene Location: 4738-5124 bp Feature: domain Description: DDE_Tnp_1 Location: 4747-4849 bp Feature: domain Description: DDE_Tnp_1 Location: 4747-4849 bp Feature: gene Location: 5923-6510 bp Ori: OTY09877.1 Feature: domain Description: Replic_Relax Location: 5953-6079 bp Feature: domain Description: Replic_Relax Location: 5953-6 079 bp Feature: domain Description: Replic_Relax Location: 6136-6385 bp Feature: domain Description: Replic_Relax Location: 6 136 -6 385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), Replic_Relax (pfam13814)

Seq: NFDH01000100.1 Bacillus thuringiensis serovar kim strain BGSC 4BP1 4BP1_contig000100, whole genome shotgun sequence (69294 bp)
Overview 1 RT 1: 55826-60115 bp Neighborhood of RT #1 [55826, 60115] CwlT_like NlpD Spr RVT-GII HNHc Feature: gene Location: 55826-56401 bp Feature: gene Location: 56418-57527 bp Ori: OTY00878.1 Feature: domain Description: CwlT_like Location: 56454-56640 bp Feature: domain Description: CwlT_like Location: 56454-56640 bp Feature: domain Description: NlpD Location: 56661-57096 bp Feature: domain Description: NlpD Location: 56661-57 096 bp Feature: domain Description: Spr Location: 57132-57468 bp Feature: domain Description: Spr Location: 57 132-57 468 bp Feature: gene Location: 57587-59383 bp Ori: OTY00879.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57845-58550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57 845-58550 bp Feature: domain Description: HNHc Note: nucleases Location: 59111-59246 bp Feature: domain Description: HNHc Note: nucleases Location: 59111-59246 bp Feature: gene Location: 59546-59776 bp Feature: gene Location: 59927-60115 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CwlT_like, NlpD (COG0739), Spr (COG0791), RVT-GII, HNHc (smart00507)