myRT

myRT report for GCA_002146885.1_ASM214688v1

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Seq: NFDP01000065.1 Bacillus thuringiensis serovar graciosensis strain BGSC 4CD1 4CD1_contig000065, whole genome shotgun sequence (10014 bp)
Overview 1 RT 1: 112-5666 bp Neighborhood of RT #1 [112, 5683] RVT-GII Intron_maturas2 HNHc Lysozyme_like RVT-GII HNHc CwlT_like Feature: gene Location: 112-1935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-1207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-1 207 bp Feature: domain Description: Intron_maturas2 Location: 1282-1585 bp Feature: domain Description: Intron_maturas2 Location: 1 282-1 585 bp Feature: domain Description: HNHc Note: nucleases Location: 1756-1909 bp Feature: domain Description: HNHc Note: nucleases Location: 1 756-1 909 bp Feature: gene Location: 2507-2716 bp Feature: domain Description: Lysozyme_like Location: 2543-2705 bp Feature: domain Description: Lysozyme_like Location: 2543-2705 bp Feature: gene Location: 2707-4443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2965-3670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2965-3670 bp Feature: domain Description: HNHc Note: nucleases Location: 4234-4366 bp Feature: domain Description: HNHc Note: nucleases Location: 4234-4366 bp Feature: gene Location: 4607-4804 bp Feature: gene Location: 5216-5683 bp Feature: domain Description: CwlT_like Location: 5420-5666 bp Feature: domain Description: CwlT_like Location: 5420-5666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Lysozyme_like (pfam13702), CwlT_like

Seq: NFDP01000064.1 Bacillus thuringiensis serovar graciosensis strain BGSC 4CD1 4CD1_contig000064, whole genome shotgun sequence (29313 bp)
Overview 1 RT 1: 112-3792 bp Neighborhood of RT #1 [112, 3833] RVT-GII Intron_maturas2 HNHc NlpA metN Feature: gene Location: 112-1935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-1207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-12 07 bp Feature: domain Description: Intron_maturas2 Location: 1282-1585 bp Feature: domain Description: Intron_maturas2 Location: 12 82 -1585 bp Feature: domain Description: HNHc Note: nucleases Location: 1756-1909 bp Feature: domain Description: HNHc Note: nucleases Location: 1756-1909 bp Feature: gene Location: 2520-2780 bp Feature: domain Description: NlpA Location: 2523-2778 bp Feature: domain Description: NlpA Location: 2 52 3-2 778 bp Feature: gene Location: 2793-3833 bp Feature: domain Description: metN Location: 2796-3792 bp Feature: domain Description: metN Location: 2 796-3792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), NlpA (COG1464), metN (PRK11153)

Seq: NFDP01000073.1 Bacillus thuringiensis serovar graciosensis strain BGSC 4CD1 4CD1_contig000073, whole genome shotgun sequence (230827 bp)
Overview 1 RT 1: 227356-230218 bp Neighborhood of RT #1 [227356, 230244] ArsP_1 YraQ RVT-GII Intron_maturas2 HNHc Feature: gene Location: 227356-227898 bp Feature: domain Description: ArsP_1 Location: 227464-227887 bp Feature: domain Description: ArsP_1 Location: 227464-227887 bp Feature: gene Location: 227880-228305 bp Feature: domain Description: YraQ Location: 227895-228291 bp Feature: domain Description: YraQ Location: 227895-228291 bp Feature: gene Location: 228421-230244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228685-229516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228685-229516 bp Feature: domain Description: Intron_maturas2 Location: 229591-229894 bp Feature: domain Description: Intron_maturas2 Location: 229591-229894 bp Feature: domain Description: HNHc Note: nucleases Location: 230065-230218 bp Feature: domain Description: HNHc Note: nucleases Location: 23 0065-23 0218 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArsP_1 (pfam03773), YraQ (COG0701), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDP01000066.1 Bacillus thuringiensis serovar graciosensis strain BGSC 4CD1 4CD1_contig000066, whole genome shotgun sequence (81424 bp)
Overview 1 RT 1: 584-4242 bp Neighborhood of RT #1 [584, 4259] RVT-GII Intron_maturas2 HNHc NlpA MDR1 MDR1 Feature: gene Location: 584-2407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-1679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 8-1679 bp Feature: domain Description: Intron_maturas2 Location: 1754-2057 bp Feature: domain Description: Intron_maturas2 Location: 1754 -2057 bp Feature: domain Description: HNHc Note: nucleases Location: 2228-2381 bp Feature: domain Description: HNHc Note: nucleases Location: 2228-2381 bp Feature: gene Location: 2518-3069 bp Feature: domain Description: NlpA Location: 2527-3070 bp Feature: domain Description: NlpA Location: 2527-3070 bp Feature: gene Location: 3351-4259 bp Feature: domain Description: MDR1 Location: 3366-4092 bp Feature: domain Description: MDR1 Location: 3366-4 092 bp Feature: domain Description: MDR1 Location: 4092-4242 bp Feature: domain Description: MDR1 Location: 4 092-4 24 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpA (COG1464), MDR1 (cd08267), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDP01000068.1 Bacillus thuringiensis serovar graciosensis strain BGSC 4CD1 4CD1_contig000068, whole genome shotgun sequence (369646 bp)
Overview 1 RT 1: 365472-369037 bp Neighborhood of RT #1 [365472, 369063] HTH_BmrR Pentapeptide_4 Pentapeptide_4 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 365472-366275 bp Feature: domain Description: HTH_BmrR Location: 365487-365802 bp Feature: domain Description: HTH_BmrR Location: 365 487-365 802 bp Feature: gene Location: 366554-367132 bp Feature: domain Description: Pentapeptide_4 Location: 366641-366809 bp Feature: domain Description: Pentapeptide_4 Location: 366641-366809 bp Feature: domain Description: Pentapeptide_4 Location: 366917-367124 bp Feature: domain Description: Pentapeptide_4 Location: 366917-367124 bp Feature: gene Location: 367240-369063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367504-368335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3675 04-368335 bp Feature: domain Description: Intron_maturas2 Location: 368410-368713 bp Feature: domain Description: Intron_maturas2 Location: 368410-368713 bp Feature: domain Description: HNHc Note: nucleases Location: 368884-369037 bp Feature: domain Description: HNHc Note: nucleases Location: 368884-369037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_BmrR (cd01107), Pentapeptide_4 (pfam13599), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDP01000061.1 Bacillus thuringiensis serovar graciosensis strain BGSC 4CD1 4CD1_contig000061, whole genome shotgun sequence (16794 bp)
Overview 1 RT 1: 584-3601 bp 2 RT 2: 12788-16185 bp Neighborhood of RT #1 [584, 3601] RVT-GII Intron_maturas2 HNHc Spr Neighborhood of RT #2 [12788, 16211] HTH_XRE CPBP RVT-GII Intron_maturas2 HNHc Feature: gene Location: 584-2407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-1679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-16 79 bp Feature: domain Description: Intron_maturas2 Location: 1754-2057 bp Feature: domain Description: Intron_maturas2 Location: 1754-2057 bp Feature: domain Description: HNHc Note: nucleases Location: 2228-2381 bp Feature: domain Description: HNHc Note: nucleases Location: 2228-2381 bp Feature: gene Location: 2519-2995 bp Feature: domain Description: Spr Location: 2597-2978 bp Feature: domain Description: Spr Location: 2597-2978 bp Feature: gene Location: 3023-3601 bp Feature: gene Location: 12788-13021 bp Feature: domain Description: HTH_XRE Location: 12827-12977 bp Feature: domain Description: HTH_XRE Location: 12827-12977 bp Feature: gene Location: 13384-14133 bp Feature: domain Description: CPBP Location: 13765-14086 bp Feature: domain Description: CPBP Location: 1376 5-14086 bp Feature: gene Location: 14388-16211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14652-15483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146 52-15483 bp Feature: domain Description: Intron_maturas2 Location: 15558-15861 bp Feature: domain Description: Intron_maturas2 Location: 15558-1586 1 bp Feature: domain Description: HNHc Note: nucleases Location: 16032-16185 bp Feature: domain Description: HNHc Note: nucleases Location: 16 032-16 185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HTH_XRE (smart00530), CPBP

Seq: NFDP01000062.1 Bacillus thuringiensis serovar graciosensis strain BGSC 4CD1 4CD1_contig000062, whole genome shotgun sequence (15479 bp)
Overview 1 RT 1: 112-5198 bp Neighborhood of RT #1 [112, 5335] RVT-GII Intron_maturas2 HNHc PnbA Feature: gene Location: 112-1935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-1207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37 6-1207 bp Feature: domain Description: Intron_maturas2 Location: 1282-1585 bp Feature: domain Description: Intron_maturas2 Location: 1282-1585 bp Feature: domain Description: HNHc Note: nucleases Location: 1756-1909 bp Feature: domain Description: HNHc Note: nucleases Location: 17 56-1909 bp Feature: gene Location: 2969-3409 bp Feature: gene Location: 3611-5335 bp Feature: domain Description: PnbA Location: 3728-5198 bp Feature: domain Description: PnbA Location: 37 28-5198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PnbA (COG2272)

Seq: NFDP01000025.1 Bacillus thuringiensis serovar graciosensis strain BGSC 4CD1 4CD1_contig000025, whole genome shotgun sequence (352880 bp)
Overview 1 RT 1: 29026-35090 bp Neighborhood of RT #1 [29026, 35095] PRK13922 PRK13927 RVT-GII HNHc PRK00024 PRK00148 Feature: gene Location: 29026-29877 bp Feature: domain Description: PRK13922 Location: 29032-29854 bp Feature: domain Description: PRK13922 Location: 29032-298 54 bp Feature: gene Location: 29919-30938 bp Feature: domain Description: PRK13927 Location: 29937-30927 bp Feature: domain Description: PRK13927 Location: 29937-30927 bp Feature: gene Location: 31260-33131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31581-32289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3158 1-3228 9 bp Feature: domain Description: HNHc Note: nucleases Location: 32883-33051 bp Feature: domain Description: HNHc Note: nucleases Location: 328 8 3-33051 bp Feature: gene Location: 33832-34473 bp Feature: domain Description: PRK00024 Location: 33844-34459 bp Feature: domain Description: PRK00024 Location: 338 44-34459 bp Feature: gene Location: 34520-35095 bp Feature: domain Description: PRK00148 Location: 34529-35090 bp Feature: domain Description: PRK00148 Location: 34529-35090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13922 (rod shape-determining protein MreC; Provisional), PRK13927 (rod shape-determining protein MreB; Provisional), RVT-GII, HNHc (smart00507), PRK00024 (DNA repair protein RadC), PRK00148 (Maf-like protein; Reviewed)

Seq: NFDP01000063.1 Bacillus thuringiensis serovar graciosensis strain BGSC 4CD1 4CD1_contig000063, whole genome shotgun sequence (151745 bp)
Overview 1 RT 1: 112-3816 bp 2 RT 2: 147175-151608 bp Neighborhood of RT #1 [112, 3816] RVT-GII Intron_maturas2 HNHc PadR Neighborhood of RT #2 [147175, 151634] COG3759 TPR_19 TPR_19 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 112-1935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-1207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-1207 bp Feature: domain Description: Intron_maturas2 Location: 1282-1585 bp Feature: domain Description: Intron_maturas2 Location: 1282-1585 bp Feature: domain Description: HNHc Note: nucleases Location: 1756-1909 bp Feature: domain Description: HNHc Note: nucleases Location: 1756-19 09 bp Feature: gene Location: 2564-2893 bp Feature: domain Description: PadR Location: 2582-2879 bp Feature: domain Description: PadR Location: 2582-2879 bp Feature: gene Location: 3340-3816 bp Feature: gene Location: 147175-147546 bp Feature: domain Description: COG3759 Location: 147181-147538 bp Feature: domain Description: COG3759 Location: 147181-147538 bp Feature: gene Location: 148230-149057 bp Feature: domain Description: TPR_19 Location: 148332-148413 bp Feature: domain Description: TPR_19 Location: 148332-148413 bp Feature: domain Description: TPR_19 Location: 148626-148695 bp Feature: domain Description: TPR_19 Location: 148626-14869 5 bp Feature: gene Location: 149811-151634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150075-150906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150075-1509 06 bp Feature: domain Description: Intron_maturas2 Location: 150981-151284 bp Feature: domain Description: Intron_maturas2 Location: 1509 81-151284 bp Feature: domain Description: HNHc Note: nucleases Location: 151455-151608 bp Feature: domain Description: HNHc Note: nucleases Location: 151455-151608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PadR (pfam03551), COG3759 (Uncharacterized membrane protein ), TPR_19 (pfam14559)