myRT

myRT report for GCA_002147065.1_ASM214706v1

Download annotations/find similar RTs

Seq: NFDE01000061.1 Bacillus wiedmannii strain BGSC 4BK1 4BK1_contig000061, whole genome shotgun sequence (43651 bp)
Overview 1 RT 1: 32551-37377 bp Neighborhood of RT #1 [32551, 37377] RVT-GII GIIM DUF3854 Feature: gene Location: 32551-33534 bp Feature: gene Location: 33857-34045 bp Feature: gene Location: 34274-36151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34598-35294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34598-35294 bp Feature: domain Description: GIIM Note: maturase Location: 35378-35564 bp Feature: domain Description: GIIM Note: maturase Location: 35378-35564 bp Feature: gene Location: 36348-36623 bp Feature: domain Description: DUF3854 Location: 36387-36591 bp Feature: domain Description: DUF3854 Location: 36387-36591 bp Feature: gene Location: 37147-37377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF3854 (pfam12965)

Seq: NFDE01000063.1 Bacillus wiedmannii strain BGSC 4BK1 4BK1_contig000063, whole genome shotgun sequence (211494 bp)
Overview 1 RT 1: 94378-100926 bp 2 RT 2: 140841-146799 bp 3 RT 3: 175189-181488 bp Neighborhood of RT #1 [94378, 104843] TraC-F-type RVT-GII HNHc VirB4_CagE TrbL Neighborhood of RT #2 [140841, 146816] KAP_NTPase PolY_Pol_V_umuC RVT-GII Intron_maturas2 HNHc PRK03103 YolD Neighborhood of RT #3 [175189, 181488] PRK08058 UvrD RVT-GII Intron_maturas2 HNHc pcrA Feature: gene Location: 94378-95283 bp Feature: gene Location: 95322-96293 bp Feature: domain Description: TraC-F-type Location: 95688-96222 bp Feature: domain Description: TraC-F-type Location: 95688-962 2 2 bp Feature: gene Location: 97022-98854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97322-98027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9732 2 -9802 7 bp Feature: domain Description: HNHc Note: nucleases Location: 98606-98738 bp Feature: domain Description: HNHc Note: nucleases Location: 98606-98738 bp Feature: gene Location: 99104-100111 bp Feature: domain Description: VirB4_CagE Location: 99410-99992 bp Feature: domain Description: VirB4_CagE Location: 99410-99992 bp Feature: gene Location: 100155-104843 bp Feature: domain Description: TrbL Location: 100611-100926 bp Feature: domain Description: TrbL Location: 100611-10092 6 bp Feature: gene Location: 140841-142775 bp Feature: domain Description: KAP_NTPase Location: 141144-141324 bp Feature: domain Description: KAP_NTPase Location: 141144-14132 4 bp Feature: gene Location: 143070-143459 bp Feature: domain Description: PolY_Pol_V_umuC Location: 143073-143454 bp Feature: domain Description: PolY_Pol_V_umuC Location: 143073-143454 bp Feature: gene Location: 144006-145817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144270-145101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1442 70-145101 bp Feature: domain Description: Intron_maturas2 Location: 145182-145515 bp Feature: domain Description: Intron_maturas2 Location: 145182 -145515 bp Feature: domain Description: HNHc Note: nucleases Location: 145611-145788 bp Feature: domain Description: HNHc Note: nucleases Location: 145611-145788 bp Feature: gene Location: 145810-146469 bp Feature: domain Description: PRK03103 Location: 145921-146461 bp Feature: domain Description: PRK03103 Location: 14592 1-146461 bp Feature: gene Location: 146469-146816 bp Feature: domain Description: YolD Location: 146529-146799 bp Feature: domain Description: YolD Location: 14652 9-146799 bp Feature: gene Location: 175189-176169 bp Feature: domain Description: PRK08058 Location: 175192-176140 bp Feature: domain Description: PRK08058 Location: 175192 -176140 bp Feature: gene Location: 176396-177682 bp Feature: domain Description: UvrD Location: 176399-177659 bp Feature: domain Description: UvrD Location: 176399-177659 bp Feature: gene Location: 177799-179637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178063-178915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178063-178915 bp Feature: domain Description: Intron_maturas2 Location: 179017-179359 bp Feature: domain Description: Intron_maturas2 Location: 179017-179359 bp Feature: domain Description: HNHc Note: nucleases Location: 179455-179608 bp Feature: domain Description: HNHc Note: nucleases Location: 179455-179608 bp Feature: gene Location: 180209-181030 bp Feature: domain Description: pcrA Location: 180389-181019 bp Feature: domain Description: pcrA Location: 180389-181019 bp Feature: gene Location: 181192-181488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrbL (pfam04610), TraC-F-type (TIGR02746), RVT-GII, HNHc (smart00507), VirB4_CagE (TIGR00929), KAP_NTPase (pfam07693), PolY_Pol_V_umuC (cd01700), Intron_maturas2 (pfam01348), PRK03103 (DNA polymerase IV; Reviewed), YolD (pfam08863)
PRK08058 (DNA polymerase III subunit delta'; Validated), UvrD (COG0210), pcrA (TIGR01073)