myRT

myRT report for GCA_002147185.1_ASM214718v1

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Seq: NFDW01000062.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000062, whole genome shotgun sequence (18545 bp)
Overview 1 RT 1: 581-4186 bp Neighborhood of RT #1 [581, 4314] RVT-GII Intron_maturas2 HNHc DUF2512 SIR2-like Feature: gene Location: 581-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 1 -1 748 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: Intron_maturas2 Location: 1 886-21 77 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: gene Location: 2814-3251 bp Feature: domain Description: DUF2512 Location: 2823-3219 bp Feature: domain Description: DUF251 2 Location: 2823-321 9 bp Feature: gene Location: 3403-4314 bp Feature: domain Description: SIR2-like Location: 3493-4186 bp Feature: domain Description: SIR2-like Location: 3493-41 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2512 (pfam10710), SIR2-like (cd01406), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000189.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000189, whole genome shotgun sequence (4080 bp)
Overview 1 RT 1: 1-3447 bp Neighborhood of RT #1 [1, 3500] Bacillus_HBL RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-599 bp Feature: domain Description: Bacillus_HBL Location: 136-583 bp Feature: domain Description: Bacillus_HBL Location: 136-583 bp Feature: gene Location: 661-1440 bp Feature: gene Location: 1560-3500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1890-2727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1890-2 72 7 bp Feature: domain Description: Intron_maturas2 Location: 2865-3156 bp Feature: domain Description: Intron_maturas2 Location: 2 865-3156 bp Feature: domain Description: HNHc Note: nucleases Location: 3288-3447 bp Feature: domain Description: HNHc Note: nucleases Location: 32 88-3447 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bacillus_HBL (pfam05791)

Seq: NFDW01000251.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000251, whole genome shotgun sequence (17482 bp)
Overview 1 RT 1: 1-4445 bp 2 RT 2: 14261-17313 bp Neighborhood of RT #1 [1, 4445] RVT-GII GIIM HNHc TraG-D_C Ftsk_gamma Neighborhood of RT #2 [14261, 17366] E1_enzyme_family RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-1380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-511 bp Feature: domain Description: GIIM Note: maturase Location: 625-793 bp Feature: domain Description: GIIM Note: maturase Location: 625-793 bp Feature: domain Description: HNHc Note: nucleases Location: 1141-1306 bp Feature: domain Description: HNHc Note: nucleases Location: 1141-13 06 bp Feature: gene Location: 1532-3403 bp Feature: domain Description: TraG-D_C Location: 1625-1940 bp Feature: domain Description: TraG-D_C Location: 1625-1940 bp Feature: domain Description: Ftsk_gamma Location: 2348-2528 bp Feature: domain Description: Ftsk_gamma Location: 23 48-2528 bp Feature: gene Location: 3675-4445 bp Feature: gene Location: 14261-14662 bp Feature: gene Location: 14675-14857 bp Feature: domain Description: E1_enzyme_family Location: 14723-14840 bp Feature: domain Description: E1_enzyme_family Location: 14723 -14840 bp Feature: gene Location: 15426-17366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15756-16593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15756-16593 bp Feature: domain Description: Intron_maturas2 Location: 16731-17022 bp Feature: domain Description: Intron_maturas2 Location: 1673 1-17022 bp Feature: domain Description: HNHc Note: nucleases Location: 17154-17313 bp Feature: domain Description: HNHc Note: nucleases Location: 17154-173 13 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), E1_enzyme_family (cl22428), Intron_maturas2 (pfam01348)

Seq: NFDW01000158.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000158, whole genome shotgun sequence (74608 bp)
Overview 1 RT 1: 69761-73975 bp Neighborhood of RT #1 [69761, 74028] BCCT COG4362 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 69761-71329 bp Feature: domain Description: BCCT Location: 69797-71240 bp Feature: domain Description: BCCT Location: 69797-7124 0 bp Feature: gene Location: 71690-71977 bp Feature: domain Description: COG4362 Location: 71699-71975 bp Feature: domain Description: COG4 362 Location: 71699-71975 bp Feature: gene Location: 72088-74028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72418-73255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 724 18-73255 bp Feature: domain Description: Intron_maturas2 Location: 73393-73684 bp Feature: domain Description: Intron_maturas2 Location: 73393-73684 bp Feature: domain Description: HNHc Note: nucleases Location: 73816-73975 bp Feature: domain Description: HNHc Note: nucleases Location: 73816-73975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BCCT (pfam02028), COG4362 (Nitric oxide synthase, oxygenase domain ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000041.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000041, whole genome shotgun sequence (91575 bp)
Overview 1 RT 1: 86990-90942 bp Neighborhood of RT #1 [86990, 90995] zf-HC2 DUF4179 DUF2812 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 86990-87967 bp Feature: domain Description: zf-HC2 Location: 87023-87098 bp Feature: domain Description: zf-HC2 Location: 87023-87098 bp Feature: domain Description: DUF4179 Location: 87302-87593 bp Feature: domain Description: DUF4179 Location: 87302-875 93 bp Feature: gene Location: 88344-88895 bp Feature: domain Description: DUF2812 Location: 88347-88641 bp Feature: domain Description: DUF2812 Location: 88347-88641 bp Feature: gene Location: 89055-90995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89385-90222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89385 -90222 bp Feature: domain Description: Intron_maturas2 Location: 90360-90651 bp Feature: domain Description: Intron_maturas2 Location: 90360-9065 1 bp Feature: domain Description: HNHc Note: nucleases Location: 90783-90942 bp Feature: domain Description: HNHc Note: nucleases Location: 90783-90942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-HC2 (pfam13490), DUF4179 (pfam13786), DUF2812 (pfam11193), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000267.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000267, whole genome shotgun sequence (23355 bp)
Overview 1 RT 1: 117-3878 bp Neighborhood of RT #1 [117, 3904] RVT-GII Intron_maturas2 HNHc ThiF InsQ Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2644-3120 bp Feature: domain Description: ThiF Location: 2995-3121 bp Feature: domain Description: ThiF Location: 2995-3121 bp Feature: gene Location: 3350-3904 bp Feature: domain Description: InsQ Location: 3398-3878 bp Feature: domain Description: InsQ Location: 3398-3878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), ThiF (pfam00899), InsQ (COG0675)

Seq: NFDW01000238.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000238, whole genome shotgun sequence (7026 bp)
Overview 1 RT 1: 924-7026 bp Neighborhood of RT #1 [924, 7026] TraC-F-type RVT-GII HNHc TraC-F-type Feature: gene Location: 924-1838 bp Feature: gene Location: 1841-2821 bp Feature: domain Description: TraC-F-type Location: 2270-2744 bp Feature: domain Description: TraC-F-type Location: 227 0-27 44 bp Feature: gene Location: 3550-5382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3850-4555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3850-4555 bp Feature: domain Description: HNHc Note: nucleases Location: 5134-5266 bp Feature: domain Description: HNHc Note: nucleases Location: 5134-5266 bp Feature: gene Location: 5674-6642 bp Feature: domain Description: TraC-F-type Location: 5701-6481 bp Feature: domain Description: TraC-F-type Location: 57 01-6481 bp Feature: gene Location: 6673-7026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), RVT-GII, HNHc (smart00507)

Seq: NFDW01000058.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000058, whole genome shotgun sequence (4370 bp)
Overview 1 RT 1: 581-4370 bp Neighborhood of RT #1 [581, 4370] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 581-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: Intron_maturas2 Location: 18 8 6-2177 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: gene Location: 2638-4370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000237.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000237, whole genome shotgun sequence (19832 bp)
Overview 1 RT 1: 4051-9831 bp Neighborhood of RT #1 [4051, 9831] DUF3854 LPD1 RVT-GII HNHc Feature: gene Location: 4051-5364 bp Feature: domain Description: DUF3854 Location: 4996-5335 bp Feature: domain Description: DUF3854 Location: 49 9 6-5335 bp Feature: gene Location: 5354-6151 bp Feature: domain Description: LPD1 Location: 5900-6095 bp Feature: domain Description: LPD1 Location: 59 00-609 5 bp Feature: gene Location: 6223-8019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6517-7213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6517-7213 bp Feature: domain Description: HNHc Note: nucleases Location: 7813-7888 bp Feature: domain Description: HNHc Note: nucleases Location: 7813-7888 bp Feature: gene Location: 8051-8305 bp Feature: gene Location: 8740-9831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3854 (pfam12965), LPD1 (pfam18796), RVT-GII, HNHc (smart00507)

Seq: NFDW01000068.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000068, whole genome shotgun sequence (29628 bp)
Overview 1 RT 1: 117-4394 bp Neighborhood of RT #1 [117, 4555] RVT-GII Intron_maturas2 HNHc MFS_MefA_like AcrR Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2626-3873 bp Feature: domain Description: MFS_MefA_like Location: 2680-3853 bp Feature: domain Description: MFS_MefA_like Location: 2680-3853 bp Feature: gene Location: 3920-4555 bp Feature: domain Description: AcrR Location: 3944-4394 bp Feature: domain Description: AcrR Location: 3944-4394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), MFS_MefA_like (cd06173), AcrR (COG1309)

Seq: NFDW01000074.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000074, whole genome shotgun sequence (13294 bp)
Overview 1 RT 1: 117-5142 bp Neighborhood of RT #1 [117, 5693] RVT-GII Intron_maturas2 HNHc CetZ_tubulin-like CetZ_tubulin-like Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 3812-4234 bp Feature: gene Location: 4239-5693 bp Feature: domain Description: CetZ_tubulin-like Location: 4278-4656 bp Feature: domain Description: CetZ_tubulin-like Location: 4278-4656 bp Feature: domain Description: CetZ_tubulin-like Location: 4788-5142 bp Feature: domain Description: CetZ_tubulin-like Location: 4788-5142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), CetZ_tubulin-like (cd02202)

Seq: NFDW01000077.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000077, whole genome shotgun sequence (6660 bp)
Overview 1 RT 1: 117-4980 bp Neighborhood of RT #1 [117, 5066] RVT-GII Intron_maturas2 HNHc Bacillus_HBL Chondroitinas_B Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-12 84 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2638-3174 bp Feature: domain Description: Bacillus_HBL Location: 2755-3172 bp Feature: domain Description: Bacillus_HBL Location: 2755-3172 bp Feature: gene Location: 4542-5066 bp Feature: domain Description: Chondroitinas_B Location: 4740-4980 bp Feature: domain Description: Chondroitinas_B Location: 4740-4980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bacillus_HBL (pfam05791), Chondroitinas_B (pfam14592)

Seq: NFDW01000078.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000078, whole genome shotgun sequence (163416 bp)
Overview 1 RT 1: 117-3730 bp 2 RT 2: 158269-162783 bp Neighborhood of RT #1 [117, 3738] RVT-GII Intron_maturas2 HNHc MPP_YhcR_N DUF3886 Neighborhood of RT #2 [158269, 162836] PRK13670 Arm-DNA-bind_4 Phage_int_SAM_3 INT_ICEBs1_C_like RVT-GII Intron_maturas2 HNHc Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2638-3273 bp Feature: domain Description: MPP_YhcR_N Location: 2752-3274 bp Feature: domain Description: MPP_YhcR_N Location: 2752-3274 bp Feature: gene Location: 3475-3738 bp Feature: domain Description: DUF3886 Location: 3532-3730 bp Feature: domain Description: DUF3886 Location: 3532-3730 bp Feature: gene Location: 158269-159495 bp Feature: domain Description: PRK13670 Location: 158272-159466 bp Feature: domain Description: PRK13 670 Location: 158272-159466 bp Feature: gene Location: 159645-160775 bp Feature: domain Description: Arm-DNA-bind_4 Location: 159675-159807 bp Feature: domain Description: Arm-DNA-bind_4 Location: 159675-159807 bp Feature: domain Description: Phage_int_SAM_3 Location: 159834-160002 bp Feature: domain Description: Phage_int_SAM_3 Location: 159834-160002 bp Feature: domain Description: INT_ICEBs1_C_like Location: 160161-160668 bp Feature: domain Description: INT_ICEBs1_C_like Location: 160161-160668 bp Feature: gene Location: 160896-162836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161226-162063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161226-162063 bp Feature: domain Description: Intron_maturas2 Location: 162201-162492 bp Feature: domain Description: Intron_maturas2 Location: 162201-162492 bp Feature: domain Description: HNHc Note: nucleases Location: 162624-162783 bp Feature: domain Description: HNHc Note: nucleases Location: 162624-162783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), MPP_YhcR_N (cd07412), DUF3886 (pfam13025), PRK13670 (nucleotidyltransferase), Arm-DNA-bind_4 (pfam14657), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189)

Seq: NFDW01000191.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000191, whole genome shotgun sequence (4654 bp)
Overview 1 RT 1: 56-4021 bp Neighborhood of RT #1 [56, 4074] HTH_28 HTH_28 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 56-1410 bp Feature: domain Description: HTH_28 Location: 80-218 bp Feature: domain Description: HTH_28 Location: 80-218 bp Feature: domain Description: HTH_28 Location: 245-404 bp Feature: domain Description: HTH_28 Location: 245-404 bp Feature: gene Location: 1444-2001 bp Feature: gene Location: 2134-4074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2464-3301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2464-3301 bp Feature: domain Description: Intron_maturas2 Location: 3439-3730 bp Feature: domain Description: Intron_maturas2 Location: 3439-3730 bp Feature: domain Description: HNHc Note: nucleases Location: 3862-4021 bp Feature: domain Description: HNHc Note: nucleases Location: 3862-4021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HTH_28 (pfam13518)

Seq: NFDW01000067.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000067, whole genome shotgun sequence (39873 bp)
Overview 1 RT 1: 581-3663 bp Neighborhood of RT #1 [581, 3734] RVT-GII Intron_maturas2 HNHc DnaD_dom Feature: gene Location: 581-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: gene Location: 2736-2862 bp Feature: gene Location: 2952-3734 bp Feature: domain Description: DnaD_dom Location: 3480-3663 bp Feature: domain Description: DnaD_dom Location: 3480-3663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DnaD_dom (TIGR01446), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000162.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000162, whole genome shotgun sequence (32778 bp)
Overview 1 RT 1: 30258-32145 bp Neighborhood of RT #1 [30258, 32198] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 30258-32198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30588-31425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30588-31425 bp Feature: domain Description: Intron_maturas2 Location: 31563-31854 bp Feature: domain Description: Intron_maturas2 Location: 31563-31854 bp Feature: domain Description: HNHc Note: nucleases Location: 31986-32145 bp Feature: domain Description: HNHc Note: nucleases Location: 31986-32145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000027.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000027, whole genome shotgun sequence (49539 bp)
Overview 1 RT 1: 45840-48906 bp Neighborhood of RT #1 [45840, 48959] PRK04323 PRK11820 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 45840-46103 bp Feature: domain Description: PRK04323 Location: 45843-46098 bp Feature: domain Description: PRK04323 Location: 45843-46098 bp Feature: gene Location: 46171-46902 bp Feature: domain Description: PRK11820 Location: 46174-46900 bp Feature: domain Description: PRK11820 Location: 4617 4-46900 bp Feature: gene Location: 47019-48959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47349-48186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47349-48186 bp Feature: domain Description: Intron_maturas2 Location: 48324-48615 bp Feature: domain Description: Intron_maturas2 Location: 48324-48615 bp Feature: domain Description: HNHc Note: nucleases Location: 48747-48906 bp Feature: domain Description: HNHc Note: nucleases Location: 48747-48906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK04323 (hypothetical protein; Provisional), PRK11820 (YicC family protein), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000229.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000229, whole genome shotgun sequence (7367 bp)
Overview 1 RT 1: 1-7362 bp Neighborhood of RT #1 [1, 7367] RVT-GII Intron_maturas2 HNHc RVT-GII HNHc KOG4768 Feature: gene Location: 1-182 bp Feature: gene Location: 855-1061 bp Feature: gene Location: 1162-2979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1432-2254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1432-2254 bp Feature: domain Description: Intron_maturas2 Location: 2335-2629 bp Feature: domain Description: Intron_maturas2 Location: 2335-2629 bp Feature: domain Description: HNHc Note: nucleases Location: 2776-2950 bp Feature: domain Description: HNHc Note: nucleases Location: 2776-2950 bp Feature: gene Location: 3571-3840 bp Feature: gene Location: 3906-5696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4203-4899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4203-4899 bp Feature: domain Description: HNHc Note: nucleases Location: 5439-5571 bp Feature: domain Description: HNHc Note: nucleases Location: 5439-5571 bp Feature: gene Location: 6663-7367 bp Feature: domain Description: KOG4768 Location: 6723-7362 bp Feature: domain Description: KOG4768 Location: 6723-7362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), KOG4768 (KOG4768, Mitochondrial mRNA maturase )

Seq: NFDW01000075.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000075, whole genome shotgun sequence (95353 bp)
Overview 1 RT 1: 117-5370 bp Neighborhood of RT #1 [117, 5399] RVT-GII Intron_maturas2 HNHc PRK12896 CcmA Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 3545-4291 bp Feature: domain Description: PRK12896 Location: 3548-4286 bp Feature: domain Description: PRK12896 Location: 3548-4286 bp Feature: gene Location: 4497-5399 bp Feature: domain Description: CcmA Location: 4500-5370 bp Feature: domain Description: CcmA Location: 4500-5370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK12896 (methionine aminopeptidase; Reviewed), CcmA (COG4133)

Seq: NFDW01000197.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000197, whole genome shotgun sequence (17089 bp)
Overview 1 RT 1: 12259-16456 bp Neighborhood of RT #1 [12259, 16509] AcoR RVT-GII Intron_maturas2 HNHc Feature: gene Location: 12259-14109 bp Feature: domain Description: AcoR Location: 12283-14107 bp Feature: domain Description: AcoR Location: 12283-14107 bp Feature: gene Location: 14232-14345 bp Feature: gene Location: 14569-16509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14899-15736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14899-15736 bp Feature: domain Description: Intron_maturas2 Location: 15874-16165 bp Feature: domain Description: Intron_maturas2 Location: 15874-16165 bp Feature: domain Description: HNHc Note: nucleases Location: 16297-16456 bp Feature: domain Description: HNHc Note: nucleases Location: 16297-16456 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcoR (COG3284), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000234.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000234, whole genome shotgun sequence (5383 bp)
Overview 1 RT 1: 107-4658 bp Neighborhood of RT #1 [107, 4687] RVT-GII HNHc RVT-GII Intron_maturas2 HNHc Feature: gene Location: 107-1897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404-1100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404-1100 bp Feature: domain Description: HNHc Note: nucleases Location: 1640-1772 bp Feature: domain Description: HNHc Note: nucleases Location: 1640-1772 bp Feature: gene Location: 2864-4687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3134-3962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3134-3962 bp Feature: domain Description: Intron_maturas2 Location: 4034-4352 bp Feature: domain Description: Intron_maturas2 Location: 4034-4352 bp Feature: domain Description: HNHc Note: nucleases Location: 4505-4658 bp Feature: domain Description: HNHc Note: nucleases Location: 4505-4658 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), Intron_maturas2 (pfam01348)

Seq: NFDW01000198.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000198, whole genome shotgun sequence (43793 bp)
Overview 1 RT 1: 38449-43624 bp Neighborhood of RT #1 [38449, 43677] CwlA SH3_3 SLH SLH SLH RVT-GII Intron_maturas2 HNHc Feature: gene Location: 38449-38907 bp Feature: gene Location: 39714-41021 bp Feature: domain Description: CwlA Location: 39753-40245 bp Feature: domain Description: CwlA Location: 39753-40245 bp Feature: domain Description: SH3_3 Location: 40305-40431 bp Feature: domain Description: SH3_3 Location: 40305-40431 bp Feature: domain Description: SLH Location: 40503-40620 bp Feature: domain Description: SLH Location: 40503-40620 bp Feature: domain Description: SLH Location: 40665-40794 bp Feature: domain Description: SLH Location: 40665-40794 bp Feature: domain Description: SLH Location: 40857-40983 bp Feature: domain Description: SLH Location: 40857-40983 bp Feature: gene Location: 41737-43677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42067-42904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42067-42904 bp Feature: domain Description: Intron_maturas2 Location: 43042-43333 bp Feature: domain Description: Intron_maturas2 Location: 43042-43333 bp Feature: domain Description: HNHc Note: nucleases Location: 43465-43624 bp Feature: domain Description: HNHc Note: nucleases Location: 43465-43624 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CwlA (COG5632), SH3_3 (pfam08239), SLH (pfam00395), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000101.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000101, whole genome shotgun sequence (8184 bp)
Overview 1 RT 1: 4506-7551 bp Neighborhood of RT #1 [4506, 7604] SASP Tar RVT-GII Intron_maturas2 HNHc Feature: gene Location: 4506-4721 bp Feature: domain Description: SASP Location: 4536-4698 bp Feature: domain Description: SASP Location: 4536-4698 bp Feature: gene Location: 4888-5547 bp Feature: domain Description: Tar Location: 4894-5539 bp Feature: domain Description: Tar Location: 4894-5539 bp Feature: gene Location: 5664-7604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5994-6831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5994-6831 bp Feature: domain Description: Intron_maturas2 Location: 6969-7260 bp Feature: domain Description: Intron_maturas2 Location: 6969-7260 bp Feature: domain Description: HNHc Note: nucleases Location: 7392-7551 bp Feature: domain Description: HNHc Note: nucleases Location: 7392-7551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SASP (pfam00269), Tar (COG0840), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000233.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000233, whole genome shotgun sequence (5383 bp)
Overview 1 RT 1: 107-4658 bp Neighborhood of RT #1 [107, 4687] RVT-GII HNHc RVT-GII Intron_maturas2 HNHc Feature: gene Location: 107-1897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404-1100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404-1100 bp Feature: domain Description: HNHc Note: nucleases Location: 1640-1772 bp Feature: domain Description: HNHc Note: nucleases Location: 1640-1772 bp Feature: gene Location: 2864-4687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3134-3962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3134-3962 bp Feature: domain Description: Intron_maturas2 Location: 4034-4352 bp Feature: domain Description: Intron_maturas2 Location: 4034-4352 bp Feature: domain Description: HNHc Note: nucleases Location: 4505-4658 bp Feature: domain Description: HNHc Note: nucleases Location: 4505-4658 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), Intron_maturas2 (pfam01348)

Seq: NFDW01000109.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000109, whole genome shotgun sequence (8283 bp)
Overview 1 RT 1: 3988-8209 bp Neighborhood of RT #1 [3988, 8283] rpsA TraG-D_C Ftsk_gamma RVT-GII GIIM HNHc Feature: gene Location: 3988-4971 bp Feature: domain Description: rpsA Location: 4255-4792 bp Feature: domain Description: rpsA Location: 425 5-4792 bp Feature: gene Location: 5229-6671 bp Feature: domain Description: TraG-D_C Location: 5241-5559 bp Feature: domain Description: TraG-D_C Location: 5241-5559 bp Feature: domain Description: Ftsk_gamma Location: 5994-6153 bp Feature: domain Description: Ftsk_gamma Location: 5994-6153 bp Feature: gene Location: 6904-8283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6913-7414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6913-7414 bp Feature: domain Description: GIIM Note: maturase Location: 7528-7696 bp Feature: domain Description: GIIM Note: maturase Location: 7528-7696 bp Feature: domain Description: HNHc Note: nucleases Location: 8044-8209 bp Feature: domain Description: HNHc Note: nucleases Location: 8044-8209 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NFDW01000025.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000025, whole genome shotgun sequence (56525 bp)
Overview 1 RT 1: 50922-56356 bp Neighborhood of RT #1 [50922, 56409] P-type_ATPase_Ca_prok P-type_ATPase_SERCA YicC_N RVT-GII Intron_maturas2 HNHc Feature: gene Location: 50922-53645 bp Feature: domain Description: P-type_ATPase_Ca_prok Location: 50988-53184 bp Feature: domain Description: P-type_ATPase_Ca_prok Location: 50988-53184 bp Feature: domain Description: P-type_ATPase_SERCA Location: 53310-53565 bp Feature: domain Description: P-type_ATPase_SERCA Location: 53310-53565 bp Feature: gene Location: 53745-53894 bp Feature: domain Description: YicC_N Location: 53751-53895 bp Feature: domain Description: YicC_N Location: 53751-53895 bp Feature: gene Location: 54469-56409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54799-55636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54799-55636 bp Feature: domain Description: Intron_maturas2 Location: 55774-56065 bp Feature: domain Description: Intron_maturas2 Location: 55774-56065 bp Feature: domain Description: HNHc Note: nucleases Location: 56197-56356 bp Feature: domain Description: HNHc Note: nucleases Location: 56197-56356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P-type_ATPase_Ca_prok (cd02089), P-type_ATPase_SERCA (cd02083), YicC_N (pfam03755), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000070.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000070, whole genome shotgun sequence (44214 bp)
Overview 1 RT 1: 117-3382 bp Neighborhood of RT #1 [117, 3382] RVT-GII Intron_maturas2 HNHc PadR Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2668-2982 bp Feature: domain Description: PadR Location: 2716-2926 bp Feature: domain Description: PadR Location: 27 16-2926 bp Feature: gene Location: 3137-3382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PadR (pfam03551)

Seq: NFDW01000231.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000231, whole genome shotgun sequence (8634 bp)
Overview 1 RT 1: 1039-8413 bp Neighborhood of RT #1 [1039, 8529] TrbL CwlT_like RVT-GII HNHc Feature: gene Location: 1039-5058 bp Feature: domain Description: TrbL Location: 1318-1816 bp Feature: domain Description: TrbL Location: 1318-1816 bp Feature: gene Location: 5055-6050 bp Feature: domain Description: CwlT_like Location: 5904-6027 bp Feature: domain Description: CwlT_like Location: 5904-6027 bp Feature: gene Location: 6724-8529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7018-7714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7018-7714 bp Feature: domain Description: HNHc Note: nucleases Location: 8275-8413 bp Feature: domain Description: HNHc Note: nucleases Location: 8275-8413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrbL (pfam04610), CwlT_like, RVT-GII, HNHc (smart00507)

Seq: NFDW01000190.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000190, whole genome shotgun sequence (53087 bp)
Overview 1 RT 1: 48895-52454 bp Neighborhood of RT #1 [48895, 52507] DUF4250 RHH_3 PRK09419 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 48895-49371 bp Feature: domain Description: DUF4250 Location: 48952-49036 bp Feature: domain Description: DUF4250 Location: 48952-49036 bp Feature: domain Description: RHH_3 Location: 49213-49342 bp Feature: domain Description: RHH_3 Location: 49213-49342 bp Feature: gene Location: 49497-50450 bp Feature: domain Description: PRK09419 Location: 49506-50445 bp Feature: domain Description: PRK09419 Location: 49506-50445 bp Feature: gene Location: 50567-52507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50897-51734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50897-51734 bp Feature: domain Description: Intron_maturas2 Location: 51872-52163 bp Feature: domain Description: Intron_maturas2 Location: 51872-52163 bp Feature: domain Description: HNHc Note: nucleases Location: 52295-52454 bp Feature: domain Description: HNHc Note: nucleases Location: 5229 5-52454 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4250 (pfam14056), RHH_3 (pfam12651), PRK09419 (multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase/5'-nucleotidase), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000071.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000071, whole genome shotgun sequence (9963 bp)
Overview 1 RT 1: 117-5232 bp Neighborhood of RT #1 [117, 5232] RVT-GII Intron_maturas2 HNHc HTH_XRE Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 3304-3648 bp Feature: domain Description: HTH_XRE Location: 3319-3490 bp Feature: domain Description: HTH_XRE Location: 3319-3490 bp Feature: gene Location: 4087-5232 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HTH_XRE (smart00530)

Seq: NFDW01000064.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000064, whole genome shotgun sequence (7049 bp)
Overview 1 RT 1: 581-4866 bp Neighborhood of RT #1 [581, 4866] RVT-GII Intron_maturas2 HNHc Replic_Relax Feature: gene Location: 581-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: gene Location: 3167-4444 bp Feature: domain Description: Replic_Relax Location: 3251-3797 bp Feature: domain Description: Replic_Relax Location: 3251-3797 bp Feature: gene Location: 4552-4866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Replic_Relax (pfam13814), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000076.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000076, whole genome shotgun sequence (7404 bp)
Overview 1 RT 1: 117-3645 bp Neighborhood of RT #1 [117, 3645] RVT-GII Intron_maturas2 HNHc NO_synthase Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2542-3426 bp Feature: domain Description: NO_synthase Location: 2554-3331 bp Feature: domain Description: NO_synthase Location: 2554-3331 bp Feature: gene Location: 3459-3645 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), NO_synthase (pfam02898)

Seq: NFDW01000073.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000073, whole genome shotgun sequence (9416 bp)
Overview 1 RT 1: 117-4127 bp Neighborhood of RT #1 [117, 4168] RVT-GII Intron_maturas2 HNHc PRK03103 recomb_XerD INT_tnpA_C_Tn554 Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2628-2891 bp Feature: domain Description: PRK03103 Location: 2637-2883 bp Feature: domain Description: PRK03103 Location: 2637-2883 bp Feature: gene Location: 3071-4168 bp Feature: domain Description: recomb_XerD Location: 3188-3335 bp Feature: domain Description: recomb_XerD Location: 3188-33 35 bp Feature: domain Description: INT_tnpA_C_Tn554 Location: 3620-4127 bp Feature: domain Description: INT_tnpA_C_Tn554 Location: 3620-4127 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK03103 (DNA polymerase IV; Reviewed), recomb_XerD (TIGR02225), INT_tnpA_C_Tn554 (cd01186)

Seq: NFDW01000185.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000185, whole genome shotgun sequence (4078 bp)
Overview 1 RT 1: 536-3909 bp Neighborhood of RT #1 [536, 3962] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 536-1021 bp Feature: gene Location: 2022-3962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2352-3189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2352-3189 bp Feature: domain Description: Intron_maturas2 Location: 3327-3618 bp Feature: domain Description: Intron_maturas2 Location: 3327-3618 bp Feature: domain Description: HNHc Note: nucleases Location: 3750-3909 bp Feature: domain Description: HNHc Note: nucleases Location: 3750-3909 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000069.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000069, whole genome shotgun sequence (4129 bp)
Overview 1 RT 1: 117-4129 bp Neighborhood of RT #1 [117, 4129] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2638-3186 bp Feature: gene Location: 3311-4129 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000060.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000060, whole genome shotgun sequence (29204 bp)
Overview 1 RT 1: 581-3720 bp Neighborhood of RT #1 [581, 3720] RVT-GII Intron_maturas2 HNHc ThiF Feature: gene Location: 581-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: gene Location: 2638-3258 bp Feature: domain Description: ThiF Location: 2641-3184 bp Feature: domain Description: ThiF Location: 2641-3184 bp Feature: gene Location: 3403-3720 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ThiF (pfam00899), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000230.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000230, whole genome shotgun sequence (2763 bp)
Overview 1 RT 1: 655-2455 bp Neighborhood of RT #1 [655, 2529] RVT-GII GIIM HNHc Feature: gene Location: 655-2529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 955-1660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 955-1660 bp Feature: domain Description: GIIM Note: maturase Location: 1774-1942 bp Feature: domain Description: GIIM Note: maturase Location: 1774-1942 bp Feature: domain Description: HNHc Note: nucleases Location: 2290-2455 bp Feature: domain Description: HNHc Note: nucleases Location: 2290-2455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NFDW01000257.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000257, whole genome shotgun sequence (28563 bp)
Overview 1 RT 1: 117-3647 bp Neighborhood of RT #1 [117, 3712] RVT-GII Intron_maturas2 HNHc nicotinamidase_related Acetyltransf_8 Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2626-3141 bp Feature: domain Description: nicotinamidase_related Location: 2638-3088 bp Feature: domain Description: nicotinamidase_related Location: 2638 -3088 bp Feature: gene Location: 3176-3712 bp Feature: domain Description: Acetyltransf_8 Location: 3218-3647 bp Feature: domain Description: Acetyltransf_8 Location: 3218-3647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), nicotinamidase_related (cd01014), Acetyltransf_8 (pfam13523)

Seq: NFDW01000243.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000243, whole genome shotgun sequence (15571 bp)
Overview 1 RT 1: 12481-15570 bp Neighborhood of RT #1 [12481, 15571] RVT-GII Feature: gene Location: 12481-12867 bp Feature: gene Location: 12885-14030 bp Feature: gene Location: 14631-15571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14901-15570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14901-15570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NFDW01000066.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000066, whole genome shotgun sequence (37853 bp)
Overview 1 RT 1: 581-5875 bp Neighborhood of RT #1 [581, 5889] RVT-GII Intron_maturas2 HNHc pPIWI_RE_X MID_pPIWI_RE RNaseH_pPIWI_RE DUF3959 Feature: gene Location: 581-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: gene Location: 2632-4914 bp Feature: domain Description: pPIWI_RE_X Location: 2659-3583 bp Feature: domain Description: pPIWI_RE_X Location: 2659-3583 bp Feature: domain Description: MID_pPIWI_RE Location: 3781-4093 bp Feature: domain Description: MID_pPIWI_RE Location: 3781-40 93 bp Feature: domain Description: RNaseH_pPIWI_RE Location: 4159-4822 bp Feature: domain Description: RNaseH_pPIWI_RE Location: 4159-4822 bp Feature: gene Location: 5122-5889 bp Feature: domain Description: DUF3959 Location: 5149-5875 bp Feature: domain Description: DUF3959 Location: 5149-5875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pPIWI_RE_X, MID_pPIWI_RE (pfam18157), RNaseH_pPIWI_RE, DUF3959 (pfam13105), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000228.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000228, whole genome shotgun sequence (4819 bp)
Overview 1 RT 1: 1-4814 bp Neighborhood of RT #1 [1, 4819] RVT-GII HNHc KOG4768 Feature: gene Location: 1-182 bp Feature: gene Location: 855-1292 bp Feature: gene Location: 1358-3148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1655-2351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1655-2351 bp Feature: domain Description: HNHc Note: nucleases Location: 2891-3023 bp Feature: domain Description: HNHc Note: nucleases Location: 2891-3023 bp Feature: gene Location: 4115-4819 bp Feature: domain Description: KOG4768 Location: 4175-4814 bp Feature: domain Description: KOG4768 Location: 41 75-4814 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), KOG4768 (KOG4768, Mitochondrial mRNA maturase )

Seq: NFDW01000072.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000072, whole genome shotgun sequence (20335 bp)
Overview 1 RT 1: 117-4185 bp Neighborhood of RT #1 [117, 4229] RVT-GII Intron_maturas2 HNHc glpT MarR Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 142 2-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2638-3501 bp Feature: domain Description: glpT Location: 2656-3502 bp Feature: domain Description: glpT Location: 2656-3502 bp Feature: gene Location: 3771-4229 bp Feature: domain Description: MarR Location: 3831-4185 bp Feature: domain Description: MarR Location: 3831-4185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), glpT (TIGR00712), MarR (pfam01047)

Seq: NFDW01000236.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000236, whole genome shotgun sequence (7316 bp)
Overview 1 RT 1: 106-7316 bp Neighborhood of RT #1 [106, 7316] RVT-GII HNHc CwlT_like Feature: gene Location: 106-1911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400-1096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400-1096 bp Feature: domain Description: HNHc Note: nucleases Location: 1657-1795 bp Feature: domain Description: HNHc Note: nucleases Location: 1657-1795 bp Feature: gene Location: 2585-3580 bp Feature: domain Description: CwlT_like Location: 3434-3557 bp Feature: domain Description: CwlT_like Location: 343 4-3557 bp Feature: gene Location: 3577-7316 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), CwlT_like

Seq: NFDW01000026.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000026, whole genome shotgun sequence (18926 bp)
Overview 1 RT 1: 15487-18293 bp Neighborhood of RT #1 [15487, 18346] DUF4865 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 15487-16035 bp Feature: domain Description: DUF4865 Location: 15490-16030 bp Feature: domain Description: DUF4865 Location: 15490-16030 bp Feature: gene Location: 16078-16290 bp Feature: gene Location: 16406-18346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16736-17573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16736-17573 bp Feature: domain Description: Intron_maturas2 Location: 17711-18002 bp Feature: domain Description: Intron_maturas2 Location: 17711-18002 bp Feature: domain Description: HNHc Note: nucleases Location: 18134-18293 bp Feature: domain Description: HNHc Note: nucleases Location: 18134-18293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4865 (pfam16157), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000119.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000119, whole genome shotgun sequence (20406 bp)
Overview 1 RT 1: 16515-20237 bp Neighborhood of RT #1 [16515, 20290] DegV RVT-GII Intron_maturas2 HNHc Feature: gene Location: 16515-17321 bp Feature: domain Description: DegV Location: 16536-17319 bp Feature: domain Description: DegV Location: 16536-17319 bp Feature: gene Location: 17614-17769 bp Feature: gene Location: 18350-20290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18680-19517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18680-19517 bp Feature: domain Description: Intron_maturas2 Location: 19655-19946 bp Feature: domain Description: Intron_maturas2 Location: 19655-19946 bp Feature: domain Description: HNHc Note: nucleases Location: 20078-20237 bp Feature: domain Description: HNHc Note: nucleases Location: 20078-20237 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DegV (TIGR00762), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000079.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000079, whole genome shotgun sequence (14216 bp)
Overview 1 RT 1: 117-4320 bp Neighborhood of RT #1 [117, 4325] RVT-GII Intron_maturas2 HNHc PRK06172 thiol_BshB2 Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2807-3550 bp Feature: domain Description: PRK06172 Location: 2810-3545 bp Feature: domain Description: PRK06172 Location: 2810-3545 bp Feature: gene Location: 3663-4325 bp Feature: domain Description: thiol_BshB2 Location: 3672-4320 bp Feature: domain Description: thiol_BshB2 Location: 3672-4320 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK06172 (SDR family oxidoreductase), thiol_BshB2 (TIGR04000)

Seq: NFDW01000098.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000098, whole genome shotgun sequence (31735 bp)
Overview 1 RT 1: 28075-31102 bp Neighborhood of RT #1 [28075, 31155] Replic_Relax T7_EssCb_Firm RVT-GII Intron_maturas2 HNHc Feature: gene Location: 28075-28695 bp Feature: domain Description: Replic_Relax Location: 28123-28588 bp Feature: domain Description: Replic_Relax Location: 28123-28588 bp Feature: gene Location: 28637-29098 bp Feature: domain Description: T7_EssCb_Firm Location: 28655-28955 bp Feature: domain Description: T7_EssCb_Firm Location: 28655-28955 bp Feature: gene Location: 29215-31155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29545-30382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29545-30382 bp Feature: domain Description: Intron_maturas2 Location: 30520-30811 bp Feature: domain Description: Intron_maturas2 Location: 30520-30811 bp Feature: domain Description: HNHc Note: nucleases Location: 30943-31102 bp Feature: domain Description: HNHc Note: nucleases Location: 30943-31102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Replic_Relax (pfam13814), T7_EssCb_Firm (TIGR03928), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000242.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000242, whole genome shotgun sequence (10445 bp)
Overview 1 RT 1: 299-10445 bp Neighborhood of RT #1 [299, 10445] NlpD Spr RVT-GII Intron_maturas2 HNHc CwlT_like RVT-GII HNHc CwlT_like Feature: gene Location: 299-874 bp Feature: gene Location: 891-1766 bp Feature: domain Description: NlpD Location: 906-1335 bp Feature: domain Description: NlpD Location: 906-1335 bp Feature: domain Description: Spr Location: 1371-1707 bp Feature: domain Description: Spr Location: 1371-1707 bp Feature: gene Location: 1926-3749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2190-3024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2190-3024 bp Feature: domain Description: Intron_maturas2 Location: 3093-3432 bp Feature: domain Description: Intron_maturas2 Location: 3093-3432 bp Feature: domain Description: HNHc Note: nucleases Location: 3570-3726 bp Feature: domain Description: HNHc Note: nucleases Location: 3570-3726 bp Feature: gene Location: 4325-4642 bp Feature: domain Description: CwlT_like Location: 4367-4631 bp Feature: domain Description: CwlT_like Location: 4367-4631 bp Feature: gene Location: 4758-6563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5052-5748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5052-5748 bp Feature: domain Description: HNHc Note: nucleases Location: 6309-6447 bp Feature: domain Description: HNHc Note: nucleases Location: 6309-6447 bp Feature: gene Location: 7237-8232 bp Feature: domain Description: CwlT_like Location: 8086-8209 bp Feature: domain Description: CwlT_like Location: 8086-8209 bp Feature: gene Location: 8229-10445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), NlpD (COG0739), Spr (COG0791), CwlT_like

Seq: NFDW01000193.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000193, whole genome shotgun sequence (41912 bp)
Overview 1 RT 1: 12490-17096 bp Neighborhood of RT #1 [12490, 17143] RVT-GII HNHc PRK03113 Feature: gene Location: 12490-12690 bp Feature: gene Location: 12766-13002 bp Feature: gene Location: 13788-15695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14088-14799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14088-14799 bp Feature: domain Description: HNHc Note: nucleases Location: 15390-15540 bp Feature: domain Description: HNHc Note: nucleases Location: 15390-15540 bp Feature: gene Location: 15917-16672 bp Feature: gene Location: 16706-17143 bp Feature: domain Description: PRK03113 Location: 16724-17096 bp Feature: domain Description: PRK03113 Location: 16724-17096 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), PRK03113 (putative disulfide oxidoreductase; Provisional)

Seq: NFDW01000246.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000246, whole genome shotgun sequence (45888 bp)
Overview 1 RT 1: 42211-45255 bp Neighborhood of RT #1 [42211, 45308] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 42211-42489 bp Feature: gene Location: 42994-43251 bp Feature: gene Location: 43368-45308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43698-44535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43698-44535 bp Feature: domain Description: Intron_maturas2 Location: 44673-44964 bp Feature: domain Description: Intron_maturas2 Location: 44673-44964 bp Feature: domain Description: HNHc Note: nucleases Location: 45096-45255 bp Feature: domain Description: HNHc Note: nucleases Location: 450 96-45255 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000021.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000021, whole genome shotgun sequence (42617 bp)
Overview 1 RT 1: 39467-42448 bp Neighborhood of RT #1 [39467, 42501] YurZ Tautomerase_2 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 39467-39775 bp Feature: domain Description: YurZ Location: 39482-39761 bp Feature: domain Description: YurZ Location: 39482-39761 bp Feature: gene Location: 39779-39979 bp Feature: domain Description: Tautomerase_2 Location: 39782-39935 bp Feature: domain Description: Tautomerase_2 Location: 39782-39935 bp Feature: gene Location: 40561-42501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40891-41728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40891-41728 bp Feature: domain Description: Intron_maturas2 Location: 41866-42157 bp Feature: domain Description: Intron_maturas2 Location: 41866-42157 bp Feature: domain Description: HNHc Note: nucleases Location: 42289-42448 bp Feature: domain Description: HNHc Note: nucleases Location: 42289-42448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YurZ (COG0599), Tautomerase_2 (pfam14552), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000091.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000091, whole genome shotgun sequence (41447 bp)
Overview 1 RT 1: 37933-41278 bp Neighborhood of RT #1 [37933, 41331] RimL NIPSNAP RVT-GII Intron_maturas2 HNHc Feature: gene Location: 37933-38529 bp Feature: domain Description: RimL Location: 38188-38485 bp Feature: domain Description: RimL Location: 38188-38485 bp Feature: gene Location: 38502-38822 bp Feature: domain Description: NIPSNAP Location: 38526-38730 bp Feature: domain Description: NIPSNAP Location: 3852 6-38730 bp Feature: gene Location: 39391-41331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39721-40558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39721-40558 bp Feature: domain Description: Intron_maturas2 Location: 40696-40987 bp Feature: domain Description: Intron_maturas2 Location: 40696-40987 bp Feature: domain Description: HNHc Note: nucleases Location: 41119-41278 bp Feature: domain Description: HNHc Note: nucleases Location: 41119-41278 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RimL (COG1670), NIPSNAP (pfam07978), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000213.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000213, whole genome shotgun sequence (23488 bp)
Overview 1 RT 1: 10002-16838 bp Neighborhood of RT #1 [10002, 16855] LPD1 RVT-GII HNHc DUF3854 T_den_put_tspse Feature: gene Location: 10002-11777 bp Feature: domain Description: LPD1 Location: 11526-11715 bp Feature: domain Description: LPD1 Location: 11526-11715 bp Feature: gene Location: 11767-12597 bp Feature: gene Location: 13370-15202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13682-14381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13682-14381 bp Feature: domain Description: HNHc Note: nucleases Location: 14921-15086 bp Feature: domain Description: HNHc Note: nucleases Location: 14921-15086 bp Feature: gene Location: 15326-15820 bp Feature: domain Description: DUF3854 Location: 15437-15791 bp Feature: domain Description: DUF3854 Location: 15437-15791 bp Feature: gene Location: 15932-16855 bp Feature: domain Description: T_den_put_tspse Location: 15974-16838 bp Feature: domain Description: T_den_put_tspse Location: 15974-16838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LPD1 (pfam18796), RVT-GII, HNHc (smart00507), DUF3854 (pfam12965), T_den_put_tspse (TIGR01784)

Seq: NFDW01000241.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000241, whole genome shotgun sequence (7920 bp)
Overview 1 RT 1: 299-7920 bp Neighborhood of RT #1 [299, 7920] RVT-GII HNHc CwlT_like Feature: gene Location: 299-874 bp Feature: gene Location: 891-2182 bp Feature: gene Location: 2233-4038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2527-3223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2527-3223 bp Feature: domain Description: HNHc Note: nucleases Location: 3784-3922 bp Feature: domain Description: HNHc Note: nucleases Location: 3784-3922 bp Feature: gene Location: 4712-5707 bp Feature: domain Description: CwlT_like Location: 5561-5684 bp Feature: domain Description: CwlT_like Location: 5561-5684 bp Feature: gene Location: 5704-7920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: NFDW01000252.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000252, whole genome shotgun sequence (2763 bp)
Overview 1 RT 1: 235-2035 bp Neighborhood of RT #1 [235, 2109] RVT-GII GIIM HNHc Feature: gene Location: 235-2109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535-1240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535-1240 bp Feature: domain Description: GIIM Note: maturase Location: 1354-1522 bp Feature: domain Description: GIIM Note: maturase Location: 1354-1522 bp Feature: domain Description: HNHc Note: nucleases Location: 1870-2035 bp Feature: domain Description: HNHc Note: nucleases Location: 1870-2035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NFDW01000258.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000258, whole genome shotgun sequence (16707 bp)
Overview 1 RT 1: 117-5144 bp Neighborhood of RT #1 [117, 5176] RVT-GII Intron_maturas2 HNHc Tar CPBP Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2638-3720 bp Feature: domain Description: Tar Location: 3010-3721 bp Feature: domain Description: Tar Location: 3010-3721 bp Feature: gene Location: 4691-5176 bp Feature: domain Description: CPBP Location: 4838-5144 bp Feature: domain Description: CPBP Location: 4838-5144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Tar (COG0840), CPBP

Seq: NFDW01000065.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000065, whole genome shotgun sequence (63503 bp)
Overview 1 RT 1: 581-3747 bp Neighborhood of RT #1 [581, 3747] RVT-GII Intron_maturas2 HNHc EFh_HEF_SCGN Feature: gene Location: 581-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: gene Location: 2683-3165 bp Feature: domain Description: EFh_HEF_SCGN Location: 2761-3016 bp Feature: domain Description: EFh_HEF_SCGN Location: 2761-3016 bp Feature: gene Location: 3631-3747 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EFh_HEF_SCGN (cd16178), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000061.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000061, whole genome shotgun sequence (10103 bp)
Overview 1 RT 1: 581-3706 bp Neighborhood of RT #1 [581, 3706] RVT-GII Intron_maturas2 HNHc PRTRC_ThiF Feature: gene Location: 581-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: gene Location: 2773-3315 bp Feature: domain Description: PRTRC_ThiF Location: 2836-3292 bp Feature: domain Description: PRTRC_ThiF Location: 2836-3292 bp Feature: gene Location: 3335-3706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRTRC_ThiF (TIGR03736), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000140.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000140, whole genome shotgun sequence (11234 bp)
Overview 1 RT 1: 7580-11065 bp Neighborhood of RT #1 [7580, 11118] FtsK_SpoIIIE RVT-GII Intron_maturas2 HNHc Feature: gene Location: 7580-7762 bp Feature: gene Location: 7878-8609 bp Feature: domain Description: FtsK_SpoIIIE Location: 8256-8586 bp Feature: domain Description: FtsK_SpoIIIE Location: 8256-8586 bp Feature: gene Location: 9178-11118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9508-10345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9508-10345 bp Feature: domain Description: Intron_maturas2 Location: 10483-10774 bp Feature: domain Description: Intron_maturas2 Location: 10483-10774 bp Feature: domain Description: HNHc Note: nucleases Location: 10906-11065 bp Feature: domain Description: HNHc Note: nucleases Location: 10906-11065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsK_SpoIIIE (pfam01580), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000209.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000209, whole genome shotgun sequence (43978 bp)
Overview 1 RT 1: 25347-32576 bp 2 RT 2: 39485-43809 bp Neighborhood of RT #1 [25347, 32576] RVT-GII GIIM KOG1000 KOG1000 Neighborhood of RT #2 [39485, 43862] LolD LolE RVT-GII Intron_maturas2 HNHc Feature: gene Location: 25347-25574 bp Feature: gene Location: 25646-26539 bp Feature: gene Location: 27301-29166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27601-28306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2760 1-28306 bp Feature: domain Description: GIIM Note: maturase Location: 28393-28576 bp Feature: domain Description: GIIM Note: maturase Location: 28393-28576 bp Feature: gene Location: 29441-31846 bp Feature: domain Description: KOG1000 Location: 30152-30368 bp Feature: domain Description: KOG1000 Location: 30152-30368 bp Feature: domain Description: KOG1000 Location: 30971-31304 bp Feature: domain Description: KOG1000 Location: 30971-31304 bp Feature: gene Location: 31863-32576 bp Feature: gene Location: 39485-40237 bp Feature: domain Description: LolD Location: 39500-40166 bp Feature: domain Description: LolD Location: 39500-40166 bp Feature: gene Location: 40245-41396 bp Feature: domain Description: LolE Location: 40257-41343 bp Feature: domain Description: LolE Location: 40257-41343 bp Feature: gene Location: 41922-43862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42252-43089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42252-43089 bp Feature: domain Description: Intron_maturas2 Location: 43227-43518 bp Feature: domain Description: Intron_maturas2 Location: 43227-43518 bp Feature: domain Description: HNHc Note: nucleases Location: 43650-43809 bp Feature: domain Description: HNHc Note: nucleases Location: 43650-43809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), LolD (COG1136), LolE (COG4591), Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000217.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000217, whole genome shotgun sequence (5975 bp)
Overview 1 RT 1: 1532-5342 bp Neighborhood of RT #1 [1532, 5395] PolY_Pol_V_umuC RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1532-1744 bp Feature: gene Location: 2327-3376 bp Feature: domain Description: PolY_Pol_V_umuC Location: 2366-3344 bp Feature: domain Description: PolY_Pol_V_umuC Location: 2366-3344 bp Feature: gene Location: 3455-5395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3785-4622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3785-4622 bp Feature: domain Description: Intron_maturas2 Location: 4760-5051 bp Feature: domain Description: Intron_maturas2 Location: 4760-5051 bp Feature: domain Description: HNHc Note: nucleases Location: 5183-5342 bp Feature: domain Description: HNHc Note: nucleases Location: 5183-5342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_Pol_V_umuC (cd01700), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000063.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000063, whole genome shotgun sequence (79056 bp)
Overview 1 RT 1: 581-3359 bp Neighborhood of RT #1 [581, 3367] RVT-GII Intron_maturas2 HNHc glpT DUF4027 Feature: gene Location: 581-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: gene Location: 2626-3123 bp Feature: domain Description: glpT Location: 2644-3115 bp Feature: domain Description: glpT Location: 2644-3115 bp Feature: gene Location: 3242-3367 bp Feature: domain Description: DUF4027 Location: 3254-3359 bp Feature: domain Description: DUF4027 Location: 3254-3359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT glpT (TIGR00712), DUF4027 (pfam13219), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFDW01000152.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000152, whole genome shotgun sequence (5050 bp)
Overview 1 RT 1: 2146-5049 bp Neighborhood of RT #1 [2146, 5050] RVT-GII Feature: gene Location: 2146-2346 bp Feature: gene Location: 2364-3509 bp Feature: gene Location: 4110-5050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4380-5049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4380-5049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NFDW01000059.1 Bacillus thuringiensis serovar aizawai strain BGSC 4J3 4J3_contig000059, whole genome shotgun sequence (10936 bp)
Overview 1 RT 1: 581-4344 bp Neighborhood of RT #1 [581, 4637] RVT-GII Intron_maturas2 HNHc DUF4879 HTH_MerR-like_sg1 UbiE Feature: gene Location: 581-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: gene Location: 2638-2907 bp Feature: domain Description: DUF4879 Location: 2653-2902 bp Feature: domain Description: DUF4879 Location: 2653-2902 bp Feature: gene Location: 3414-4637 bp Feature: domain Description: HTH_MerR-like_sg1 Location: 3417-3729 bp Feature: domain Description: HTH_MerR-like_sg1 Location: 3417-3729 bp Feature: domain Description: UbiE Location: 4074-4344 bp Feature: domain Description: UbiE Location: 4074-4344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4879 (pfam16219), HTH_MerR-like_sg1 (cd04777), UbiE (COG2226), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)