myRT

myRT report for GCA_002147395.1_ASM214739v1

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Seq: NFEF01000020.1 Bacillus thuringiensis serovar kyushuensis strain BGSC 4U1 4U1_contig000020, whole genome shotgun sequence (50125 bp)
Overview 1 RT 1: 506-2953 bp Neighborhood of RT #1 [506, 2955] RVT-GII GIIM DUF5065 Feature: gene Location: 506-1780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-1322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-1 322 bp Feature: domain Description: GIIM Note: maturase Location: 1382-1589 bp Feature: domain Description: GIIM Note: maturase Location: 1 382-1 589 bp Feature: gene Location: 1854-2054 bp Feature: gene Location: 2497-2955 bp Feature: domain Description: DUF5065 Location: 2503-2953 bp Feature: domain Description: DUF5065 Location: 2503-2953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5065 (pfam16723), RVT-GII, GIIM (pfam08388)

Seq: NFEF01000025.1 Bacillus thuringiensis serovar kyushuensis strain BGSC 4U1 4U1_contig000025, whole genome shotgun sequence (7735 bp)
Overview 1 RT 1: 84-3984 bp Neighborhood of RT #1 [84, 4082] RVT-GII GIIM SpoIIP HflC Feature: gene Location: 84-1358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285-900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 85-900 bp Feature: domain Description: GIIM Note: maturase Location: 960-1167 bp Feature: domain Description: GIIM Note: maturase Location: 960-1167 bp Feature: gene Location: 1829-3021 bp Feature: domain Description: SpoIIP Location: 2111-2921 bp Feature: domain Description: SpoIIP Location: 2 111-2 92 1 bp Feature: gene Location: 3114-4082 bp Feature: domain Description: HflC Location: 3126-3984 bp Feature: domain Description: HflC Location: 312 6-3984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpoIIP (pfam07454), HflC (COG0330), RVT-GII, GIIM (pfam08388)

Seq: NFEF01000022.1 Bacillus thuringiensis serovar kyushuensis strain BGSC 4U1 4U1_contig000022, whole genome shotgun sequence (30839 bp)
Overview 1 RT 1: 506-2949 bp Neighborhood of RT #1 [506, 2966] RVT-GII GIIM RnmV TRX_family Feature: gene Location: 506-1780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-1322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-13 22 bp Feature: domain Description: GIIM Note: maturase Location: 1382-1589 bp Feature: domain Description: GIIM Note: maturase Location: 13 82-1589 bp Feature: gene Location: 2310-2654 bp Feature: domain Description: RnmV Location: 2316-2592 bp Feature: domain Description: RnmV Location: 23 16-2592 bp Feature: gene Location: 2658-2966 bp Feature: domain Description: TRX_family Location: 2691-2949 bp Feature: domain Description: TRX_family Location: 2691-2949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RnmV (COG1658), TRX_family (cd02947), RVT-GII, GIIM (pfam08388)

Seq: NFEF01000018.1 Bacillus thuringiensis serovar kyushuensis strain BGSC 4U1 4U1_contig000018, whole genome shotgun sequence (22528 bp)
Overview 1 RT 1: 506-2842 bp Neighborhood of RT #1 [506, 2842] RVT-GII GIIM Cupredoxin_like_3 Feature: gene Location: 506-1780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-1322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-1322 bp Feature: domain Description: GIIM Note: maturase Location: 1382-1589 bp Feature: domain Description: GIIM Note: maturase Location: 1382-1589 bp Feature: gene Location: 1958-2347 bp Feature: domain Description: Cupredoxin_like_3 Location: 2090-2342 bp Feature: domain Description: Cupredoxin_like_3 Location: 2090-234 2 bp Feature: gene Location: 2669-2842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cupredoxin_like_3 (cd04203), RVT-GII, GIIM (pfam08388)

Seq: NFEF01000173.1 Bacillus thuringiensis serovar kyushuensis strain BGSC 4U1 4U1_contig000173, whole genome shotgun sequence (6491 bp)
Overview 1 RT 1: 3795-5795 bp Neighborhood of RT #1 [3795, 5986] COG4824 XhlA RVT-GII GIIM Feature: gene Location: 3795-4220 bp Feature: domain Description: COG4824 Location: 3810-4200 bp Feature: domain Description: COG4824 Location: 3810-4200 bp Feature: gene Location: 4295-4519 bp Feature: domain Description: XhlA Location: 4313-4502 bp Feature: domain Description: XhlA Location: 4313-45 02 bp Feature: gene Location: 4712-5986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4913-5528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4913-5 5 28 bp Feature: domain Description: GIIM Note: maturase Location: 5588-5795 bp Feature: domain Description: GIIM Note: maturase Location: 5 5 88-5 795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4824 (Phage-related holin (Lysis protein) ), XhlA (pfam10779), RVT-GII, GIIM (pfam08388)

Seq: NFEF01000122.1 Bacillus thuringiensis serovar kyushuensis strain BGSC 4U1 4U1_contig000122, whole genome shotgun sequence (2711 bp)
Overview 1 RT 1: 1-2437 bp Neighborhood of RT #1 [1, 2628] Peptidase_S74 bZIP_ATF4 RVT-GII GIIM Feature: gene Location: 1-837 bp Feature: domain Description: Peptidase_S74 Location: 379-592 bp Feature: domain Description: Peptidase_S74 Location: 379-592 bp Feature: domain Description: bZIP_ATF4 Location: 688-805 bp Feature: domain Description: bZIP_ATF4 Location: 6 88-805 bp Feature: gene Location: 1354-2628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1555-2170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1555-2170 bp Feature: domain Description: GIIM Note: maturase Location: 2230-2437 bp Feature: domain Description: GIIM Note: maturase Location: 2230-2437 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Peptidase_S74 (pfam13884), bZIP_ATF4 (cd14692)

Seq: NFEF01000172.1 Bacillus thuringiensis serovar kyushuensis strain BGSC 4U1 4U1_contig000172, whole genome shotgun sequence (5464 bp)
Overview 1 RT 1: 2765-4768 bp Neighborhood of RT #1 [2765, 4959] COG4824 XhlA RVT-GII GIIM Feature: gene Location: 2765-3190 bp Feature: domain Description: COG4824 Location: 2780-3170 bp Feature: domain Description: COG4824 Location: 27 80-317 0 bp Feature: gene Location: 3266-3490 bp Feature: domain Description: XhlA Location: 3284-3473 bp Feature: domain Description: XhlA Location: 3284-347 3 bp Feature: gene Location: 3685-4959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3886-4501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3886-4501 bp Feature: domain Description: GIIM Note: maturase Location: 4561-4768 bp Feature: domain Description: GIIM Note: maturase Location: 4561-47 68 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4824 (Phage-related holin (Lysis protein) ), XhlA (pfam10779), RVT-GII, GIIM (pfam08388)

Seq: NFEF01000161.1 Bacillus thuringiensis serovar kyushuensis strain BGSC 4U1 4U1_contig000161, whole genome shotgun sequence (26316 bp)
Overview 1 RT 1: 11919-16391 bp Neighborhood of RT #1 [11919, 16414] DEDD_Tnp_IS110 COG3547 RVT-GII PRK10420 DUF4870 Feature: gene Location: 11919-12221 bp Feature: gene Location: 12633-13778 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 12648-13122 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 12648 -13122 bp Feature: domain Description: COG3547 Location: 13377-13737 bp Feature: domain Description: COG3547 Location: 13377-13737 bp Feature: gene Location: 13708-13938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13756-13876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13756-138 76 bp Feature: gene Location: 14139-15800 bp Feature: domain Description: PRK10420 Location: 14142-15798 bp Feature: domain Description: PRK10420 Location: 14142-15798 bp Feature: gene Location: 16097-16414 bp Feature: domain Description: DUF4870 Location: 16115-16391 bp Feature: domain Description: DUF48 70 Location: 16115-16391 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), COG3547 (Transposase ), RVT-GII, PRK10420 (L-lactate permease; Provisional), DUF4870 (pfam09685)

Seq: NFEF01000084.1 Bacillus thuringiensis serovar kyushuensis strain BGSC 4U1 4U1_contig000084, whole genome shotgun sequence (4994 bp)
Overview 1 RT 1: 1259-4298 bp Neighborhood of RT #1 [1259, 4489] Rve RVT-GII GIIM Feature: gene Location: 1259-1768 bp Feature: gene Location: 1943-2110 bp Feature: domain Description: Rve Location: 1976-2111 bp Feature: domain Description: Rve Location: 19 76-2111 bp Feature: gene Location: 3215-4489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3416-4031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3416-4031 bp Feature: domain Description: GIIM Note: maturase Location: 4091-4298 bp Feature: domain Description: GIIM Note: maturase Location: 409 1-429 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388)

Seq: NFEF01000021.1 Bacillus thuringiensis serovar kyushuensis strain BGSC 4U1 4U1_contig000021, whole genome shotgun sequence (73209 bp)
Overview 1 RT 1: 506-2357 bp Neighborhood of RT #1 [506, 2357] RVT-GII GIIM XhlA Feature: gene Location: 506-1780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-1322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-1322 bp Feature: domain Description: GIIM Note: maturase Location: 1382-1589 bp Feature: domain Description: GIIM Note: maturase Location: 1382-1589 bp Feature: gene Location: 1882-2118 bp Feature: domain Description: XhlA Location: 1903-2095 bp Feature: domain Description: XhlA Location: 1903-2095 bp Feature: gene Location: 2118-2357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XhlA (pfam10779), RVT-GII, GIIM (pfam08388)

Seq: NFEF01000121.1 Bacillus thuringiensis serovar kyushuensis strain BGSC 4U1 4U1_contig000121, whole genome shotgun sequence (2675 bp)
Overview 1 RT 1: 1-2401 bp Neighborhood of RT #1 [1, 2592] Peptidase_S74 RVT-GII GIIM Feature: gene Location: 1-801 bp Feature: domain Description: Peptidase_S74 Location: 379-556 bp Feature: domain Description: Peptidase_S74 Location: 379-556 bp Feature: gene Location: 1318-2592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1519-2134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1519-2134 bp Feature: domain Description: GIIM Note: maturase Location: 2194-2401 bp Feature: domain Description: GIIM Note: maturase Location: 2194-2401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Peptidase_S74 (pfam13884)

Seq: NFEF01000023.1 Bacillus thuringiensis serovar kyushuensis strain BGSC 4U1 4U1_contig000023, whole genome shotgun sequence (2714 bp)
Overview 1 RT 1: 84-2626 bp Neighborhood of RT #1 [84, 2694] RVT-GII GIIM IstB_IS21 Feature: gene Location: 84-1358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285-900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285-900 bp Feature: domain Description: GIIM Note: maturase Location: 960-1167 bp Feature: domain Description: GIIM Note: maturase Location: 960-1167 bp Feature: gene Location: 1902-2135 bp Feature: gene Location: 2212-2694 bp Feature: domain Description: IstB_IS21 Location: 2218-2626 bp Feature: domain Description: IstB_IS21 Location: 2218-2626 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IstB_IS21 (pfam01695), RVT-GII, GIIM (pfam08388)

Seq: NFEF01000028.1 Bacillus thuringiensis serovar kyushuensis strain BGSC 4U1 4U1_contig000028, whole genome shotgun sequence (12568 bp)
Overview 1 RT 1: 84-5203 bp Neighborhood of RT #1 [84, 5439] RVT-GII GIIM BppU_N PblB Peptidase_S74 Feature: gene Location: 84-1358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285-900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285-900 bp Feature: domain Description: GIIM Note: maturase Location: 960-1167 bp Feature: domain Description: GIIM Note: maturase Location: 960-1167 bp Feature: gene Location: 1901-3082 bp Feature: domain Description: BppU_N Location: 1937-2312 bp Feature: domain Description: BppU_N Location: 1937-2312 bp Feature: gene Location: 3097-5439 bp Feature: domain Description: PblB Location: 3109-4507 bp Feature: domain Description: PblB Location: 3109-4507 bp Feature: domain Description: Peptidase_S74 Location: 5059-5203 bp Feature: domain Description: Peptidase_S74 Location: 5059-5203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BppU_N, PblB (COG4926), Peptidase_S74 (pfam13884), RVT-GII, GIIM (pfam08388)

Seq: NFEF01000024.1 Bacillus thuringiensis serovar kyushuensis strain BGSC 4U1 4U1_contig000024, whole genome shotgun sequence (142298 bp)
Overview 1 RT 1: 84-4041 bp Neighborhood of RT #1 [84, 4052] RVT-GII GIIM BirA BirA2 PRK13299 Feature: gene Location: 84-1358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285-900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285-900 bp Feature: domain Description: GIIM Note: maturase Location: 960-1167 bp Feature: domain Description: GIIM Note: maturase Location: 960-1167 bp Feature: gene Location: 1894-2874 bp Feature: domain Description: BirA Location: 1906-2131 bp Feature: domain Description: BirA Location: 1906-2131 bp Feature: domain Description: BirA2 Location: 2164-2869 bp Feature: domain Description: BirA2 Location: 2164-2869 bp Feature: gene Location: 2859-4052 bp Feature: domain Description: PRK13299 Location: 2865-4041 bp Feature: domain Description: PRK13299 Location: 2865-4041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BirA (COG1654), BirA2 (COG0340), PRK13299 (tRNA CCA-pyrophosphorylase; Provisional), RVT-GII, GIIM (pfam08388)

Seq: NFEF01000204.1 Bacillus thuringiensis serovar kyushuensis strain BGSC 4U1 4U1_contig000204, whole genome shotgun sequence (7907 bp)
Overview 1 RT 1: 3970-7633 bp Neighborhood of RT #1 [3970, 7824] HTH_XRE Rve RVT-GII GIIM Feature: gene Location: 3970-5667 bp Feature: domain Description: HTH_XRE Location: 5512-5632 bp Feature: domain Description: HTH_XRE Location: 5512-5632 bp Feature: gene Location: 5772-6017 bp Feature: domain Description: Rve Location: 5832-5955 bp Feature: domain Description: Rve Location: 5832-5955 bp Feature: gene Location: 6550-7824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6751-7366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6751-7366 bp Feature: domain Description: GIIM Note: maturase Location: 7426-7633 bp Feature: domain Description: GIIM Note: maturase Location: 7426-7633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rve (COG3316), RVT-GII, GIIM (pfam08388)

Seq: NFEF01000027.1 Bacillus thuringiensis serovar kyushuensis strain BGSC 4U1 4U1_contig000027, whole genome shotgun sequence (13839 bp)
Overview 1 RT 1: 84-2993 bp Neighborhood of RT #1 [84, 3058] RVT-GII GIIM COG4824 xerC Feature: gene Location: 84-1358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285-900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285-900 bp Feature: domain Description: GIIM Note: maturase Location: 960-1167 bp Feature: domain Description: GIIM Note: maturase Location: 960-116 7 bp Feature: gene Location: 1859-2074 bp Feature: domain Description: COG4824 Location: 1874-2075 bp Feature: domain Description: COG4824 Location: 1874-2075 bp Feature: gene Location: 2090-3058 bp Feature: domain Description: xerC Location: 2153-2993 bp Feature: domain Description: xerC Location: 2153-2993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4824 (Phage-related holin (Lysis protein) ), xerC (PRK01287), RVT-GII, GIIM (pfam08388)

Seq: NFEF01000110.1 Bacillus thuringiensis serovar kyushuensis strain BGSC 4U1 4U1_contig000110, whole genome shotgun sequence (7567 bp)
Overview 1 RT 1: 4739-6871 bp Neighborhood of RT #1 [4739, 7062] HAD_HPP His_Phos_1 RVT-GII GIIM Feature: gene Location: 4739-5044 bp Feature: domain Description: HAD_HPP Location: 4748-5042 bp Feature: domain Description: HAD_HPP Location: 4748-5042 bp Feature: gene Location: 5051-5641 bp Feature: domain Description: His_Phos_1 Location: 5060-5621 bp Feature: domain Description: His_Phos_1 Location: 5060-5621 bp Feature: gene Location: 5788-7062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5989-6604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5989-6604 bp Feature: domain Description: GIIM Note: maturase Location: 6664-6871 bp Feature: domain Description: GIIM Note: maturase Location: 6664-6871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HAD_HPP (cd07517), His_Phos_1 (pfam00300), RVT-GII, GIIM (pfam08388)

Seq: NFEF01000026.1 Bacillus thuringiensis serovar kyushuensis strain BGSC 4U1 4U1_contig000026, whole genome shotgun sequence (20529 bp)
Overview 1 RT 1: 84-2670 bp Neighborhood of RT #1 [84, 2696] RVT-GII GIIM gcvH ArsC_like Feature: gene Location: 84-1358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285-900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285-900 bp Feature: domain Description: GIIM Note: maturase Location: 960-1167 bp Feature: domain Description: GIIM Note: maturase Location: 960-1167 bp Feature: gene Location: 1906-2289 bp Feature: domain Description: gcvH Location: 1915-2287 bp Feature: domain Description: gcvH Location: 1915-2287 bp Feature: gene Location: 2331-2696 bp Feature: domain Description: ArsC_like Location: 2340-2670 bp Feature: domain Description: ArsC_like Location: 2340-2670 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gcvH (TIGR00527), ArsC_like (cd03036), RVT-GII, GIIM (pfam08388)

Seq: NFEF01000019.1 Bacillus thuringiensis serovar kyushuensis strain BGSC 4U1 4U1_contig000019, whole genome shotgun sequence (9426 bp)
Overview 1 RT 1: 506-2996 bp Neighborhood of RT #1 [506, 3007] RVT-GII GIIM COG4824 CwlA SH3b SH3b Feature: gene Location: 506-1780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-1322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-1322 bp Feature: domain Description: GIIM Note: maturase Location: 1382-1589 bp Feature: domain Description: GIIM Note: maturase Location: 1382-1589 bp Feature: gene Location: 1863-2075 bp Feature: domain Description: COG4824 Location: 1869-2055 bp Feature: domain Description: COG4824 Location: 1869-2055 bp Feature: gene Location: 2075-3007 bp Feature: domain Description: CwlA Location: 2084-2576 bp Feature: domain Description: CwlA Location: 2084-2576 bp Feature: domain Description: SH3b Location: 2612-2729 bp Feature: domain Description: SH3b Location: 2612-2729 bp Feature: domain Description: SH3b Location: 2837-2996 bp Feature: domain Description: SH3b Location: 2837-2996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4824 (Phage-related holin (Lysis protein) ), CwlA (COG5632), SH3b (smart00287), RVT-GII, GIIM (pfam08388)