myRT

myRT report for GCA_002147475.1_ASM214747v1

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Seq: NFEJ01000070.1 Bacillus thuringiensis serovar ostriniae strain BGSC 4Z1 4Z1_contig000070, whole genome shotgun sequence (141929 bp)
Overview 1 RT 1: 93218-99766 bp Neighborhood of RT #1 [93218, 103683] TraC-F-type RVT-GII HNHc VirB4_CagE TrbL Feature: gene Location: 93218-94123 bp Feature: gene Location: 94162-95133 bp Feature: domain Description: TraC-F-type Location: 94528-95062 bp Feature: domain Description: TraC-F-type Location: 94528-95062 bp Feature: gene Location: 95862-97694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96162-96867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 961 62-96867 bp Feature: domain Description: HNHc Note: nucleases Location: 97446-97578 bp Feature: domain Description: HNHc Note: nucleases Location: 97446-97578 bp Feature: gene Location: 97944-98951 bp Feature: domain Description: VirB4_CagE Location: 98250-98832 bp Feature: domain Description: VirB4_CagE Location: 98250-98832 bp Feature: gene Location: 98995-103683 bp Feature: domain Description: TrbL Location: 99451-99766 bp Feature: domain Description: TrbL Location: 99451 -99766 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), RVT-GII, HNHc (smart00507), VirB4_CagE (TIGR00929), TrbL (pfam04610)

Seq: NFEJ01000022.1 Bacillus thuringiensis serovar ostriniae strain BGSC 4Z1 4Z1_contig000022, whole genome shotgun sequence (10893 bp)
Overview 1 RT 1: 5814-10761 bp Neighborhood of RT #1 [5814, 10790] KAP_NTPase PolY_Pol_V_umuC RVT-GII Intron_maturas2 HNHc Feature: gene Location: 5814-7748 bp Feature: domain Description: KAP_NTPase Location: 6117-6297 bp Feature: domain Description: KAP_NTPase Location: 6117-62 97 bp Feature: gene Location: 8043-8432 bp Feature: domain Description: PolY_Pol_V_umuC Location: 8046-8427 bp Feature: domain Description: PolY_Pol_V_umuC Location: 8046-842 7 bp Feature: gene Location: 8979-10790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9243-10074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 43-10074 bp Feature: domain Description: Intron_maturas2 Location: 10155-10488 bp Feature: domain Description: Intron_maturas2 Location: 10155-10488 bp Feature: domain Description: HNHc Note: nucleases Location: 10584-10761 bp Feature: domain Description: HNHc Note: nucleases Location: 10584-10761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KAP_NTPase (pfam07693), PolY_Pol_V_umuC (cd01700), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEJ01000001.1 Bacillus thuringiensis serovar ostriniae strain BGSC 4Z1 4Z1_contig000001, whole genome shotgun sequence (475365 bp)
Overview 1 RT 1: 559-3355 bp Neighborhood of RT #1 [559, 3360] RVT-GII Intron_maturas2 HNHc PRK03103 YolD Feature: gene Location: 559-2370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823-1654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823 -1654 bp Feature: domain Description: Intron_maturas2 Location: 1735-2068 bp Feature: domain Description: Intron_maturas2 Location: 173 5-2068 bp Feature: domain Description: HNHc Note: nucleases Location: 2164-2341 bp Feature: domain Description: HNHc Note: nucleases Location: 2164-23 41 bp Feature: gene Location: 2363-3022 bp Feature: domain Description: PRK03103 Location: 2474-3014 bp Feature: domain Description: PRK03 103 Location: 2474-3 014 bp Feature: gene Location: 3019-3360 bp Feature: domain Description: YolD Location: 3082-3355 bp Feature: domain Description: YolD Location: 3 082-3 3 55 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03103 (DNA polymerase IV; Reviewed), YolD (pfam08863), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEJ01000067.1 Bacillus thuringiensis serovar ostriniae strain BGSC 4Z1 4Z1_contig000067, whole genome shotgun sequence (36779 bp)
Overview 1 RT 1: 559-3352 bp 2 RT 2: 31742-36161 bp Neighborhood of RT #1 [559, 3369] RVT-GII Intron_maturas2 HNHc PRK03103 YolD Neighborhood of RT #2 [31742, 36190] PRK08058 UvrD RVT-GII Intron_maturas2 HNHc Feature: gene Location: 559-2370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823-1654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823-1654 bp Feature: domain Description: Intron_maturas2 Location: 1735-2068 bp Feature: domain Description: Intron_maturas2 Location: 1735-2068 bp Feature: domain Description: HNHc Note: nucleases Location: 2164-2341 bp Feature: domain Description: HNHc Note: nucleases Location: 2164 -234 1 bp Feature: gene Location: 2363-3022 bp Feature: domain Description: PRK03103 Location: 2474-3014 bp Feature: domain Description: PRK03103 Location: 24 74 -3014 bp Feature: gene Location: 3022-3369 bp Feature: domain Description: YolD Location: 3082-3352 bp Feature: domain Description: YolD Location: 3082-3352 bp Feature: gene Location: 31742-32722 bp Feature: domain Description: PRK08058 Location: 31745-32693 bp Feature: domain Description: PRK08058 Location: 3174 5-32693 bp Feature: gene Location: 32949-34235 bp Feature: domain Description: UvrD Location: 32952-34212 bp Feature: domain Description: UvrD Location: 32952-34 212 bp Feature: gene Location: 34352-36190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34616-35468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 616-354 68 bp Feature: domain Description: Intron_maturas2 Location: 35570-35912 bp Feature: domain Description: Intron_maturas2 Location: 35570-35912 bp Feature: domain Description: HNHc Note: nucleases Location: 36008-36161 bp Feature: domain Description: HNHc Note: nucleases Location: 36008-36161 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03103 (DNA polymerase IV; Reviewed), YolD (pfam08863), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK08058 (DNA polymerase III subunit delta'; Validated), UvrD (COG0210)

Seq: NFEJ01000021.1 Bacillus thuringiensis serovar ostriniae strain BGSC 4Z1 4Z1_contig000021, whole genome shotgun sequence (10893 bp)
Overview 1 RT 1: 5814-10761 bp Neighborhood of RT #1 [5814, 10790] KAP_NTPase PolY_Pol_V_umuC RVT-GII Intron_maturas2 HNHc Feature: gene Location: 5814-7748 bp Feature: domain Description: KAP_NTPase Location: 6117-6297 bp Feature: domain Description: KAP_NTPase Location: 6117-6297 bp Feature: gene Location: 8043-8432 bp Feature: domain Description: PolY_Pol_V_umuC Location: 8046-8427 bp Feature: domain Description: PolY_Pol_V_umuC Location: 8046-8427 bp Feature: gene Location: 8979-10790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9243-10074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9243-10074 bp Feature: domain Description: Intron_maturas2 Location: 10155-10488 bp Feature: domain Description: Intron_maturas2 Location: 1015 5 -10488 bp Feature: domain Description: HNHc Note: nucleases Location: 10584-10761 bp Feature: domain Description: HNHc Note: nucleases Location: 105 84-10761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KAP_NTPase (pfam07693), PolY_Pol_V_umuC (cd01700), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEJ01000040.1 Bacillus thuringiensis serovar ostriniae strain BGSC 4Z1 4Z1_contig000040, whole genome shotgun sequence (25494 bp)
Overview 1 RT 1: 21697-25357 bp Neighborhood of RT #1 [21697, 25386] pcrA RVT-GII Intron_maturas2 HNHc Feature: gene Location: 21697-21993 bp Feature: gene Location: 22155-22976 bp Feature: domain Description: pcrA Location: 22335-22965 bp Feature: domain Description: pcrA Location: 22335-2296 5 bp Feature: gene Location: 23548-25386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23812-24664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23812-246 6 4 bp Feature: domain Description: Intron_maturas2 Location: 24766-25108 bp Feature: domain Description: Intron_maturas2 Location: 2476 6 -25108 bp Feature: domain Description: HNHc Note: nucleases Location: 25204-25357 bp Feature: domain Description: HNHc Note: nucleases Location: 25204-25357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pcrA (TIGR01073), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEJ01000035.1 Bacillus thuringiensis serovar ostriniae strain BGSC 4Z1 4Z1_contig000035, whole genome shotgun sequence (477529 bp)
Overview 1 RT 1: 109-3830 bp Neighborhood of RT #1 [109, 3832] RVT-GII Intron_maturas2 HNHc UvrD Acetyltransf_10 Feature: gene Location: 109-1947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373-1225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37 3-1225 bp Feature: domain Description: Intron_maturas2 Location: 1327-1669 bp Feature: domain Description: Intron_maturas2 Location: 1327 -1669 bp Feature: domain Description: HNHc Note: nucleases Location: 1765-1918 bp Feature: domain Description: HNHc Note: nucleases Location: 17 65-1918 bp Feature: gene Location: 2519-3310 bp Feature: domain Description: UvrD Location: 2672-3299 bp Feature: domain Description: UvrD Location: 267 2-3299 bp Feature: gene Location: 3410-3832 bp Feature: domain Description: Acetyltransf_10 Location: 3473-3830 bp Feature: domain Description: Acetyltransf_10 Location: 347 3-3830 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), UvrD (COG0210), Acetyltransf_10 (pfam13673)

Seq: NFEJ01000036.1 Bacillus thuringiensis serovar ostriniae strain BGSC 4Z1 4Z1_contig000036, whole genome shotgun sequence (515917 bp)
Overview 1 RT 1: 590-4418 bp Neighborhood of RT #1 [590, 4429] RVT-GII Intron_maturas2 HNHc UvrD Spore-coat_CotZ Feature: gene Location: 590-2428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 854-1706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8 54-1706 bp Feature: domain Description: Intron_maturas2 Location: 1808-2150 bp Feature: domain Description: Intron_maturas2 Location: 18 08 -2150 bp Feature: domain Description: HNHc Note: nucleases Location: 2246-2399 bp Feature: domain Description: HNHc Note: nucleases Location: 2246-2399 bp Feature: gene Location: 2557-3819 bp Feature: domain Description: UvrD Location: 2560-3802 bp Feature: domain Description: UvrD Location: 2560-38 02 bp Feature: gene Location: 3962-4429 bp Feature: domain Description: Spore-coat_CotZ Location: 3974-4418 bp Feature: domain Description: Spore-coat_CotZ Location: 3974-4418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), Spore-coat_CotZ (pfam10612), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEJ01000046.1 Bacillus thuringiensis serovar ostriniae strain BGSC 4Z1 4Z1_contig000046, whole genome shotgun sequence (339930 bp)
Overview 1 RT 1: 29516-34011 bp Neighborhood of RT #1 [29516, 34011] DUF4870 PRK10420 RVT-GII DEDD_Tnp_IS110 COG3547 Feature: gene Location: 29516-29833 bp Feature: domain Description: DUF4870 Location: 29534-29810 bp Feature: domain Description: DUF4870 Location: 29 534-29 810 bp Feature: gene Location: 30129-31790 bp Feature: domain Description: PRK10420 Location: 30132-31788 bp Feature: domain Description: PRK10420 Location: 30132-31788 bp Feature: gene Location: 31990-32220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32038-32158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32038-32158 bp Feature: gene Location: 32150-33295 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 32165-32639 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 32165-32639 bp Feature: domain Description: COG3547 Location: 32873-33251 bp Feature: domain Description: COG3547 Location: 32873-33251 bp Feature: gene Location: 33709-34011 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4870 (pfam09685), PRK10420 (L-lactate permease; Provisional), RVT-GII, DEDD_Tnp_IS110 (pfam01548), COG3547 (Transposase )