myRT

myRT report for GCA_002147535.1_ASM214753v1

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Seq: NFEM01000045.1 Bacillus thuringiensis strain HD5 HD5_contig000045, whole genome shotgun sequence (34921 bp)
Overview 1 RT 1: 92-10307 bp Neighborhood of RT #1 [92, 10307] COG4584 PRK09183 RVT-GII GIIM DEXDc_RapA DEXHc_HARP_SMARCAL1 RVT-GII Intron_maturas2 HNHc KOG1000 Feature: gene Location: 92-1387 bp Feature: domain Description: COG4584 Location: 506-896 bp Feature: domain Description: COG4584 Location: 506-896 bp Feature: gene Location: 1377-2129 bp Feature: domain Description: PRK09183 Location: 1383-2109 bp Feature: domain Description: PRK091 83 Location: 1 383-21 09 bp Feature: gene Location: 2474-4339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2774-3479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2774-3479 bp Feature: domain Description: GIIM Note: maturase Location: 3566-3749 bp Feature: domain Description: GIIM Note: maturase Location: 3566-3749 bp Feature: gene Location: 4614-5483 bp Feature: domain Description: DEXDc_RapA Location: 4665-4770 bp Feature: domain Description: DEXDc_RapA Location: 4665-4770 bp Feature: domain Description: DEXHc_HARP_SMARCAL1 Location: 5325-5457 bp Feature: domain Description: DEXHc_HARP_SMARCAL1 Location: 5325-5457 bp Feature: gene Location: 6086-7921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6353-7184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6353-71 84 bp Feature: domain Description: Intron_maturas2 Location: 7253-7625 bp Feature: domain Description: Intron_maturas2 Location: 7253-7625 bp Feature: domain Description: HNHc Note: nucleases Location: 7721-7868 bp Feature: domain Description: HNHc Note: nucleases Location: 7721 -7868 bp Feature: gene Location: 7922-9577 bp Feature: domain Description: KOG1000 Location: 8702-9035 bp Feature: domain Description: KOG1 000 Location: 8702-9035 bp Feature: gene Location: 9594-10307 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09183 (transposase/IS protein; Provisional), RVT-GII, GIIM (pfam08388), DEXDc_RapA (cd18011), DEXHc_HARP_SMARCAL1 (cd18010), Intron_maturas2 (pfam01348), HNHc (smart00507), COG4584 (Transposase ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily )

Seq: NFEM01000099.1 Bacillus thuringiensis strain HD5 HD5_contig000099, whole genome shotgun sequence (37049 bp)
Overview 1 RT 1: 11437-17188 bp Neighborhood of RT #1 [11437, 17217] RVT-GII HNHc LPD1 DUF3854 Feature: gene Location: 11437-12528 bp Feature: gene Location: 12963-13217 bp Feature: gene Location: 13249-15045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13543-14239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13543-142 39 bp Feature: domain Description: HNHc Note: nucleases Location: 14839-14914 bp Feature: domain Description: HNHc Note: nucleases Location: 14839-14914 bp Feature: gene Location: 15117-15914 bp Feature: domain Description: LPD1 Location: 15663-15858 bp Feature: domain Description: LPD1 Location: 15663-15858 bp Feature: gene Location: 15904-17217 bp Feature: domain Description: DUF3854 Location: 16849-17188 bp Feature: domain Description: DUF3854 Location: 16849-17188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), LPD1 (pfam18796), DUF3854 (pfam12965)

Seq: NFEM01000084.1 Bacillus thuringiensis strain HD5 HD5_contig000084, whole genome shotgun sequence (3891 bp)
Overview 1 RT 1: 100-3891 bp Neighborhood of RT #1 [100, 3891] RVT-GII HNHc CwlT_like Feature: gene Location: 100-1905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394-1090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 94-1090 bp Feature: domain Description: HNHc Note: nucleases Location: 1651-1789 bp Feature: domain Description: HNHc Note: nucleases Location: 1651-1789 bp Feature: gene Location: 2579-3574 bp Feature: domain Description: CwlT_like Location: 3428-3551 bp Feature: domain Description: CwlT_like Location: 3 428-3 551 bp Feature: gene Location: 3571-3891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), CwlT_like

Seq: NFEM01000083.1 Bacillus thuringiensis strain HD5 HD5_contig000083, whole genome shotgun sequence (7754 bp)
Overview 1 RT 1: 704-6968 bp Neighborhood of RT #1 [704, 6968] RVT-GII HNHc CwlT_like RVT-GII Intron_maturas2 HNHc NlpD Spr Feature: gene Location: 704-2509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998-1694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998-1694 bp Feature: domain Description: HNHc Note: nucleases Location: 2255-2393 bp Feature: domain Description: HNHc Note: nucleases Location: 2255-2393 bp Feature: gene Location: 2625-2942 bp Feature: domain Description: CwlT_like Location: 2667-2931 bp Feature: domain Description: CwlT_like Location: 2667-2931 bp Feature: gene Location: 3518-5341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3782-4616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3782-4 616 bp Feature: domain Description: Intron_maturas2 Location: 4685-5024 bp Feature: domain Description: Intron_maturas2 Location: 4 685-5024 bp Feature: domain Description: HNHc Note: nucleases Location: 5162-5318 bp Feature: domain Description: HNHc Note: nucleases Location: 5162-5318 bp Feature: gene Location: 5501-6376 bp Feature: domain Description: NlpD Location: 5516-5945 bp Feature: domain Description: NlpD Location: 5516-594 5 bp Feature: domain Description: Spr Location: 5981-6317 bp Feature: domain Description: Spr Location: 5981-6317 bp Feature: gene Location: 6393-6968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CwlT_like, RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), NlpD (COG0739), Spr (COG0791)

Seq: NFEM01000097.1 Bacillus thuringiensis strain HD5 HD5_contig000097, whole genome shotgun sequence (7195 bp)
Overview 1 RT 1: 1-6887 bp Neighborhood of RT #1 [1, 6961] RVT-GII HNHc RVT-GII GIIM HNHc Feature: gene Location: 1-1154 bp Feature: gene Location: 2121-3911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2418-3114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2418-3114 bp Feature: domain Description: HNHc Note: nucleases Location: 3654-3786 bp Feature: domain Description: HNHc Note: nucleases Location: 365 4-3786 bp Feature: gene Location: 3977-4414 bp Feature: gene Location: 5087-6961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5387-6092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 387-6092 bp Feature: domain Description: GIIM Note: maturase Location: 6206-6374 bp Feature: domain Description: GIIM Note: maturase Location: 6206-6374 bp Feature: domain Description: HNHc Note: nucleases Location: 6722-6887 bp Feature: domain Description: HNHc Note: nucleases Location: 6722-6887 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), GIIM (pfam08388)

Seq: NFEM01000110.1 Bacillus thuringiensis strain HD5 HD5_contig000110, whole genome shotgun sequence (7754 bp)
Overview 1 RT 1: 787-6935 bp Neighborhood of RT #1 [787, 7051] NlpD Spr RVT-GII Intron_maturas2 HNHc RVT-GII HNHc Feature: gene Location: 787-1362 bp Feature: gene Location: 1379-2254 bp Feature: domain Description: NlpD Location: 1394-1823 bp Feature: domain Description: NlpD Location: 1394-1823 bp Feature: domain Description: Spr Location: 1859-2195 bp Feature: domain Description: Spr Location: 1859-2195 bp Feature: gene Location: 2414-4237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2678-3512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26 78-3512 bp Feature: domain Description: Intron_maturas2 Location: 3581-3920 bp Feature: domain Description: Intron_maturas2 Location: 3581-3920 bp Feature: domain Description: HNHc Note: nucleases Location: 4058-4214 bp Feature: domain Description: HNHc Note: nucleases Location: 4058-4214 bp Feature: gene Location: 4825-5195 bp Feature: gene Location: 5246-7051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5540-6236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5540-6 236 bp Feature: domain Description: HNHc Note: nucleases Location: 6797-6935 bp Feature: domain Description: HNHc Note: nucleases Location: 6 797-6 935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEM01000076.1 Bacillus thuringiensis strain HD5 HD5_contig000076, whole genome shotgun sequence (10946 bp)
Overview 1 RT 1: 7107-10534 bp Neighborhood of RT #1 [7107, 10557] NlpD Spr RVT-GII Intron_maturas2 HNHc Feature: gene Location: 7107-7682 bp Feature: gene Location: 7699-8574 bp Feature: domain Description: NlpD Location: 7714-8143 bp Feature: domain Description: NlpD Location: 7 7 14-8143 bp Feature: domain Description: Spr Location: 8179-8515 bp Feature: domain Description: Spr Location: 817 9-8515 bp Feature: gene Location: 8734-10557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8998-9832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8998-9832 bp Feature: domain Description: Intron_maturas2 Location: 9901-10240 bp Feature: domain Description: Intron_maturas2 Location: 9901-10240 bp Feature: domain Description: HNHc Note: nucleases Location: 10378-10534 bp Feature: domain Description: HNHc Note: nucleases Location: 1037 8-10534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEM01000132.1 Bacillus thuringiensis strain HD5 HD5_contig000132, whole genome shotgun sequence (22615 bp)
Overview 1 RT 1: 1-4445 bp 2 RT 2: 18742-22400 bp Neighborhood of RT #1 [1, 4445] RVT-GII GIIM HNHc TraG-D_C Ftsk_gamma Neighborhood of RT #2 [18742, 22516] HTH_XRE DNA_BRE_C RVT-GII HNHc Feature: gene Location: 1-1380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-511 bp Feature: domain Description: GIIM Note: maturase Location: 625-793 bp Feature: domain Description: GIIM Note: maturase Location: 625-793 bp Feature: domain Description: HNHc Note: nucleases Location: 1141-1306 bp Feature: domain Description: HNHc Note: nucleases Location: 1141-1306 bp Feature: gene Location: 1532-3403 bp Feature: domain Description: TraG-D_C Location: 1625-1940 bp Feature: domain Description: TraG-D_C Location: 1625-1940 bp Feature: domain Description: Ftsk_gamma Location: 2348-2528 bp Feature: domain Description: Ftsk_gamma Location: 2348 -2528 bp Feature: gene Location: 3675-4445 bp Feature: gene Location: 18742-19137 bp Feature: domain Description: HTH_XRE Location: 18763-18934 bp Feature: domain Description: HTH_XRE Location: 18 763-18 934 bp Feature: gene Location: 19247-20017 bp Feature: domain Description: DNA_BRE_C Location: 19508-20000 bp Feature: domain Description: DNA_BRE_C Location: 19508 -20000 bp Feature: gene Location: 20711-22516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21005-21701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21005-21701 bp Feature: domain Description: HNHc Note: nucleases Location: 22262-22400 bp Feature: domain Description: HNHc Note: nucleases Location: 22262-22400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), HTH_XRE (smart00530), DNA_BRE_C (cl00213)

Seq: NFEM01000155.1 Bacillus thuringiensis strain HD5 HD5_contig000155, whole genome shotgun sequence (23616 bp)
Overview 1 RT 1: 20789-23617 bp Neighborhood of RT #1 [20789, 23616] RVT-GII Feature: gene Location: 20789-21175 bp Feature: gene Location: 21193-22338 bp Feature: gene Location: 22939-23616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23209-23617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23209 -23617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NFEM01000091.1 Bacillus thuringiensis strain HD5 HD5_contig000091, whole genome shotgun sequence (395663 bp)
Overview 1 RT 1: 390966-395448 bp Neighborhood of RT #1 [390966, 395564] Ntn_PVA ETR_like RVT-GII HNHc Feature: gene Location: 390966-391952 bp Feature: domain Description: Ntn_PVA Location: 390972-391872 bp Feature: domain Description: Ntn_PVA Location: 390972-391872 bp Feature: gene Location: 392102-393085 bp Feature: domain Description: ETR_like Location: 392123-393059 bp Feature: domain Description: ETR_like Location: 392123-393059 bp Feature: gene Location: 393759-395564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394053-394749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394053-394749 bp Feature: domain Description: HNHc Note: nucleases Location: 395310-395448 bp Feature: domain Description: HNHc Note: nucleases Location: 395310 -395448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ntn_PVA (cd00542), ETR_like (cd05282), RVT-GII, HNHc (smart00507)

Seq: NFEM01000008.1 Bacillus thuringiensis strain HD5 HD5_contig000008, whole genome shotgun sequence (236699 bp)
Overview 1 RT 1: 232977-235845 bp Neighborhood of RT #1 [232977, 235961] YugN amiF RVT-GII HNHc Feature: gene Location: 232977-233342 bp Feature: domain Description: YugN Location: 232995-233256 bp Feature: domain Description: YugN Location: 232995-233256 bp Feature: gene Location: 233389-234012 bp Feature: domain Description: amiF Location: 233392-234007 bp Feature: domain Description: amiF Location: 233392-234007 bp Feature: gene Location: 234129-235961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234429-235134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234429-235134 bp Feature: domain Description: HNHc Note: nucleases Location: 235713-235845 bp Feature: domain Description: HNHc Note: nucleases Location: 235713-235845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YugN (pfam08868), amiF (PRK13287), RVT-GII, HNHc (smart00507)

Seq: NFEM01000118.1 Bacillus thuringiensis strain HD5 HD5_contig000118, whole genome shotgun sequence (5369 bp)
Overview 1 RT 1: 1-4550 bp Neighborhood of RT #1 [1, 4666] Phage_int_SAM_1 RVT-GII HNHc Feature: gene Location: 1-1350 bp Feature: gene Location: 2577-2777 bp Feature: domain Description: Phage_int_SAM_1 Location: 2610-2760 bp Feature: domain Description: Phage_int_SAM_1 Location: 2610-2760 bp Feature: gene Location: 2861-4666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3155-3851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3155-3851 bp Feature: domain Description: HNHc Note: nucleases Location: 4412-4550 bp Feature: domain Description: HNHc Note: nucleases Location: 4412 -4550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), RVT-GII, HNHc (smart00507)

Seq: NFEM01000148.1 Bacillus thuringiensis strain HD5 HD5_contig000148, whole genome shotgun sequence (21219 bp)
Overview 1 RT 1: 16665-21145 bp Neighborhood of RT #1 [16665, 21219] rpsA TraG-D_C Ftsk_gamma Ftsk_gamma RVT-GII GIIM HNHc Feature: gene Location: 16665-17648 bp Feature: domain Description: rpsA Location: 16932-17469 bp Feature: domain Description: rpsA Location: 16932-17469 bp Feature: gene Location: 17907-19559 bp Feature: domain Description: TraG-D_C Location: 17916-18189 bp Feature: domain Description: TraG-D_C Location: 17916-18189 bp Feature: domain Description: Ftsk_gamma Location: 18549-18729 bp Feature: domain Description: Ftsk_gamma Location: 18549-18729 bp Feature: domain Description: Ftsk_gamma Location: 18882-19056 bp Feature: domain Description: Ftsk_gamma Location: 18882-19056 bp Feature: gene Location: 19840-21219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19849-20350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19849-20350 bp Feature: domain Description: GIIM Note: maturase Location: 20464-20632 bp Feature: domain Description: GIIM Note: maturase Location: 20464-20632 bp Feature: domain Description: HNHc Note: nucleases Location: 20980-21145 bp Feature: domain Description: HNHc Note: nucleases Location: 20980-21145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NFEM01000082.1 Bacillus thuringiensis strain HD5 HD5_contig000082, whole genome shotgun sequence (303810 bp)
Overview 1 RT 1: 299624-303578 bp Neighborhood of RT #1 [299624, 303694] caa3_CtaG amiF RVT-GII HNHc Feature: gene Location: 299624-300529 bp Feature: domain Description: caa3_CtaG Location: 299633-300473 bp Feature: domain Description: caa3_CtaG Location: 299633-300473 bp Feature: gene Location: 300757-301146 bp Feature: domain Description: amiF Location: 300760-301132 bp Feature: domain Description: amiF Location: 300760-301132 bp Feature: gene Location: 301862-303694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302162-302867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302162-302867 bp Feature: domain Description: HNHc Note: nucleases Location: 303446-303578 bp Feature: domain Description: HNHc Note: nucleases Location: 303446-303578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT caa3_CtaG (TIGR02737), amiF (PRK13287), RVT-GII, HNHc (smart00507)

Seq: NFEM01000133.1 Bacillus thuringiensis strain HD5 HD5_contig000133, whole genome shotgun sequence (7195 bp)
Overview 1 RT 1: 235-7195 bp Neighborhood of RT #1 [235, 7195] RVT-GII GIIM HNHc RVT-GII HNHc Feature: gene Location: 235-2109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535-1240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535-1240 bp Feature: domain Description: GIIM Note: maturase Location: 1354-1522 bp Feature: domain Description: GIIM Note: maturase Location: 1354-15 22 bp Feature: domain Description: HNHc Note: nucleases Location: 1870-2035 bp Feature: domain Description: HNHc Note: nucleases Location: 1870-2035 bp Feature: gene Location: 2782-3219 bp Feature: gene Location: 3285-5075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3582-4278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3582-4278 bp Feature: domain Description: HNHc Note: nucleases Location: 4818-4950 bp Feature: domain Description: HNHc Note: nucleases Location: 4818-4950 bp Feature: gene Location: 6042-7195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NFEM01000038.1 Bacillus thuringiensis strain HD5 HD5_contig000038, whole genome shotgun sequence (34766 bp)
Overview 1 RT 1: 30070-33947 bp Neighborhood of RT #1 [30070, 34063] CynX FadR RVT-GII HNHc Feature: gene Location: 30070-31260 bp Feature: domain Description: CynX Location: 30085-31231 bp Feature: domain Description: CynX Location: 30085-31231 bp Feature: gene Location: 31331-32011 bp Feature: domain Description: FadR Location: 31361-31997 bp Feature: domain Description: FadR Location: 31361-31997 bp Feature: gene Location: 32258-34063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32552-33248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32552-33248 bp Feature: domain Description: HNHc Note: nucleases Location: 33809-33947 bp Feature: domain Description: HNHc Note: nucleases Location: 33809-33947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CynX (TIGR00896), FadR (COG2186), RVT-GII, HNHc (smart00507)

Seq: NFEM01000108.1 Bacillus thuringiensis strain HD5 HD5_contig000108, whole genome shotgun sequence (6511 bp)
Overview 1 RT 1: 1-5657 bp Neighborhood of RT #1 [1, 5773] TrbL TraC-F-type RVT-GII HNHc Feature: gene Location: 1-2651 bp Feature: domain Description: TrbL Location: 280-778 bp Feature: domain Description: TrbL Location: 280-778 bp Feature: gene Location: 2682-3626 bp Feature: domain Description: TraC-F-type Location: 2691-3465 bp Feature: domain Description: TraC-F-type Location: 2691-3465 bp Feature: gene Location: 3941-5773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4241-4946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4241-4946 bp Feature: domain Description: HNHc Note: nucleases Location: 5525-5657 bp Feature: domain Description: HNHc Note: nucleases Location: 5525-5657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrbL (pfam04610), TraC-F-type (TIGR02746), RVT-GII, HNHc (smart00507)

Seq: NFEM01000119.1 Bacillus thuringiensis strain HD5 HD5_contig000119, whole genome shotgun sequence (5483 bp)
Overview 1 RT 1: 922-5251 bp Neighborhood of RT #1 [922, 5367] TraC-F-type RVT-GII HNHc Feature: gene Location: 922-1836 bp Feature: gene Location: 1839-2819 bp Feature: domain Description: TraC-F-type Location: 2268-2742 bp Feature: domain Description: TraC-F-type Location: 2268-2742 bp Feature: gene Location: 3535-5367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3835-4540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3835-4540 bp Feature: domain Description: HNHc Note: nucleases Location: 5119-5251 bp Feature: domain Description: HNHc Note: nucleases Location: 5119-5251 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), RVT-GII, HNHc (smart00507)

Seq: NFEM01000019.1 Bacillus thuringiensis strain HD5 HD5_contig000019, whole genome shotgun sequence (6511 bp)
Overview 1 RT 1: 739-4638 bp Neighborhood of RT #1 [739, 6511] RVT-GII HNHc TraC-F-type TrbL Feature: gene Location: 739-2571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1039-1744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1039-1744 bp Feature: domain Description: HNHc Note: nucleases Location: 2323-2455 bp Feature: domain Description: HNHc Note: nucleases Location: 2323-2455 bp Feature: gene Location: 2862-3830 bp Feature: domain Description: TraC-F-type Location: 2889-3669 bp Feature: domain Description: TraC-F-type Location: 2889-3669 bp Feature: gene Location: 3861-6511 bp Feature: domain Description: TrbL Location: 4140-4638 bp Feature: domain Description: TrbL Location: 4140-4638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), TrbL (pfam04610), RVT-GII, HNHc (smart00507)

Seq: NFEM01000101.1 Bacillus thuringiensis strain HD5 HD5_contig000101, whole genome shotgun sequence (9699 bp)
Overview 1 RT 1: 5860-9287 bp Neighborhood of RT #1 [5860, 9310] NlpD Spr RVT-GII Intron_maturas2 HNHc Feature: gene Location: 5860-6435 bp Feature: gene Location: 6452-7327 bp Feature: domain Description: NlpD Location: 6467-6896 bp Feature: domain Description: NlpD Location: 6467-6896 bp Feature: domain Description: Spr Location: 6932-7268 bp Feature: domain Description: Spr Location: 6932-7268 bp Feature: gene Location: 7487-9310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7751-8585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7751-8585 bp Feature: domain Description: Intron_maturas2 Location: 8654-8993 bp Feature: domain Description: Intron_maturas2 Location: 8654-8993 bp Feature: domain Description: HNHc Note: nucleases Location: 9131-9287 bp Feature: domain Description: HNHc Note: nucleases Location: 9131-9287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEM01000042.1 Bacillus thuringiensis strain HD5 HD5_contig000042, whole genome shotgun sequence (6928 bp)
Overview 1 RT 1: 1-2831 bp Neighborhood of RT #1 [1, 2831] RVT-GII Feature: gene Location: 1-678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-679 bp Feature: gene Location: 1279-2424 bp Feature: gene Location: 2442-2831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII