myRT

myRT report for GCA_002147555.1_ASM214755v1

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Seq: NFEN01000046.1 Bacillus thuringiensis strain I13 I13_contig000046, whole genome shotgun sequence (18926 bp)
Overview 1 RT 1: 15487-18293 bp Neighborhood of RT #1 [15487, 18346] DUF4865 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 15487-16035 bp Feature: domain Description: DUF4865 Location: 15490-16030 bp Feature: domain Description: DUF4865 Location: 1 5490-1 6030 bp Feature: gene Location: 16078-16290 bp Feature: gene Location: 16406-18346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16736-17573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6736-1 7573 bp Feature: domain Description: Intron_maturas2 Location: 17711-18002 bp Feature: domain Description: Intron_maturas2 Location: 1 771 1 -1 8002 bp Feature: domain Description: HNHc Note: nucleases Location: 18134-18293 bp Feature: domain Description: HNHc Note: nucleases Location: 1 81 34-1 8293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4865 (pfam16157), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000201.1 Bacillus thuringiensis strain I13 I13_contig000201, whole genome shotgun sequence (8634 bp)
Overview 1 RT 1: 1039-8413 bp Neighborhood of RT #1 [1039, 8529] TrbL CwlT_like RVT-GII HNHc Feature: gene Location: 1039-5058 bp Feature: domain Description: TrbL Location: 1318-1816 bp Feature: domain Description: TrbL Location: 1318-1816 bp Feature: gene Location: 5055-6050 bp Feature: domain Description: CwlT_like Location: 5904-6027 bp Feature: domain Description: CwlT_like Location: 5904-602 7 bp Feature: gene Location: 6724-8529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7018-7714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7018-7714 bp Feature: domain Description: HNHc Note: nucleases Location: 8275-8413 bp Feature: domain Description: HNHc Note: nucleases Location: 82 75-8413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrbL (pfam04610), CwlT_like, RVT-GII, HNHc (smart00507)

Seq: NFEN01000115.1 Bacillus thuringiensis strain I13 I13_contig000115, whole genome shotgun sequence (15353 bp)
Overview 1 RT 1: 12388-14652 bp Neighborhood of RT #1 [12388, 14843] RVT-GII GIIM Feature: gene Location: 12388-12651 bp Feature: gene Location: 12653-13189 bp Feature: gene Location: 13569-14843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13770-14385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 770-143 85 bp Feature: domain Description: GIIM Note: maturase Location: 14445-14652 bp Feature: domain Description: GIIM Note: maturase Location: 14445-14652 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NFEN01000076.1 Bacillus thuringiensis strain I13 I13_contig000076, whole genome shotgun sequence (43978 bp)
Overview 1 RT 1: 117-4423 bp 2 RT 2: 11403-18632 bp Neighborhood of RT #1 [117, 4494] RVT-GII Intron_maturas2 HNHc LolE LolD Neighborhood of RT #2 [11403, 18632] KOG1000 KOG1000 RVT-GII GIIM Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 7-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 14 22-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 184 5-2004 bp Feature: gene Location: 2583-3734 bp Feature: domain Description: LolE Location: 2595-3681 bp Feature: domain Description: LolE Location: 2595-3681 bp Feature: gene Location: 3742-4494 bp Feature: domain Description: LolD Location: 3757-4423 bp Feature: domain Description: LolD Location: 3757-4 4 23 bp Feature: gene Location: 11403-12116 bp Feature: gene Location: 12133-14538 bp Feature: domain Description: KOG1000 Location: 12844-13060 bp Feature: domain Description: KOG1000 Location: 1284 4 -13060 bp Feature: domain Description: KOG1000 Location: 13663-13996 bp Feature: domain Description: KOG1000 Location: 13663-13996 bp Feature: gene Location: 14813-16678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15113-15818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15113-15818 bp Feature: domain Description: GIIM Note: maturase Location: 15905-16088 bp Feature: domain Description: GIIM Note: maturase Location: 15905-16088 bp Feature: gene Location: 17440-18333 bp Feature: gene Location: 18405-18632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), LolE (COG4591), LolD (COG1136), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), GIIM (pfam08388)

Seq: NFEN01000122.1 Bacillus thuringiensis strain I13 I13_contig000122, whole genome shotgun sequence (3604 bp)
Overview 1 RT 1: 1-3435 bp Neighborhood of RT #1 [1, 3488] OrfB_IS605 ThiF RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-255 bp Feature: domain Description: OrfB_IS605 Location: 40-256 bp Feature: domain Description: OrfB_IS605 Location: 40-25 6 bp Feature: gene Location: 485-961 bp Feature: domain Description: ThiF Location: 836-962 bp Feature: domain Description: ThiF Location: 836-962 bp Feature: gene Location: 1548-3488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1878-2715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1878-2715 bp Feature: domain Description: Intron_maturas2 Location: 2853-3144 bp Feature: domain Description: Intron_maturas2 Location: 285 3-3144 bp Feature: domain Description: HNHc Note: nucleases Location: 3276-3435 bp Feature: domain Description: HNHc Note: nucleases Location: 3276-3435 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OrfB_IS605 (pfam01385), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), ThiF (pfam00899)

Seq: NFEN01000215.1 Bacillus thuringiensis strain I13 I13_contig000215, whole genome shotgun sequence (7920 bp)
Overview 1 RT 1: 1-7622 bp Neighborhood of RT #1 [1, 7622] CwlT_like RVT-GII HNHc Feature: gene Location: 1-2217 bp Feature: gene Location: 2214-3209 bp Feature: domain Description: CwlT_like Location: 3063-3186 bp Feature: domain Description: CwlT_like Location: 306 3-3186 bp Feature: gene Location: 3883-5688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4177-4873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4177-4873 bp Feature: domain Description: HNHc Note: nucleases Location: 5434-5572 bp Feature: domain Description: HNHc Note: nucleases Location: 5434-5572 bp Feature: gene Location: 5739-7030 bp Feature: gene Location: 7047-7622 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CwlT_like, RVT-GII, HNHc (smart00507)

Seq: NFEN01000062.1 Bacillus thuringiensis strain I13 I13_contig000062, whole genome shotgun sequence (38154 bp)
Overview 1 RT 1: 581-5875 bp Neighborhood of RT #1 [581, 5889] RVT-GII Intron_maturas2 HNHc pPIWI_RE_X MID_pPIWI_RE RNaseH_pPIWI_RE DUF3959 Feature: gene Location: 581-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-17 48 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: Intron_maturas2 Location: 1886-217 7 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: gene Location: 2632-4914 bp Feature: domain Description: pPIWI_RE_X Location: 2659-3583 bp Feature: domain Description: pPIWI_RE_X Location: 2659-3583 bp Feature: domain Description: MID_pPIWI_RE Location: 3781-4093 bp Feature: domain Description: MID_pPIWI_RE Location: 37 81-4093 bp Feature: domain Description: RNaseH_pPIWI_RE Location: 4159-4822 bp Feature: domain Description: RNaseH_pPIWI_RE Location: 4159-4822 bp Feature: gene Location: 5122-5889 bp Feature: domain Description: DUF3959 Location: 5149-5875 bp Feature: domain Description: DUF3959 Location: 5149-587 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pPIWI_RE_X, MID_pPIWI_RE (pfam18157), RNaseH_pPIWI_RE, DUF3959 (pfam13105), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000227.1 Bacillus thuringiensis strain I13 I13_contig000227, whole genome shotgun sequence (17482 bp)
Overview 1 RT 1: 1-4445 bp 2 RT 2: 14261-17313 bp Neighborhood of RT #1 [1, 4445] RVT-GII GIIM HNHc TraG-D_C Ftsk_gamma Neighborhood of RT #2 [14261, 17366] E1_enzyme_family RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-1380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-511 bp Feature: domain Description: GIIM Note: maturase Location: 625-793 bp Feature: domain Description: GIIM Note: maturase Location: 625-793 bp Feature: domain Description: HNHc Note: nucleases Location: 1141-1306 bp Feature: domain Description: HNHc Note: nucleases Location: 1141-1306 bp Feature: gene Location: 1532-3403 bp Feature: domain Description: TraG-D_C Location: 1625-1940 bp Feature: domain Description: TraG-D_C Location: 1625-1940 bp Feature: domain Description: Ftsk_gamma Location: 2348-2528 bp Feature: domain Description: Ftsk_gamma Location: 2348 -2528 bp Feature: gene Location: 3675-4445 bp Feature: gene Location: 14261-14662 bp Feature: gene Location: 14675-14857 bp Feature: domain Description: E1_enzyme_family Location: 14723-14840 bp Feature: domain Description: E1_enzyme_family Location: 14723-148 40 bp Feature: gene Location: 15426-17366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15756-16593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15756-16593 bp Feature: domain Description: Intron_maturas2 Location: 16731-17022 bp Feature: domain Description: Intron_maturas2 Location: 16731-17022 bp Feature: domain Description: HNHc Note: nucleases Location: 17154-17313 bp Feature: domain Description: HNHc Note: nucleases Location: 17154-17313 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), E1_enzyme_family (cl22428), Intron_maturas2 (pfam01348)

Seq: NFEN01000101.1 Bacillus thuringiensis strain I13 I13_contig000101, whole genome shotgun sequence (31735 bp)
Overview 1 RT 1: 28075-31102 bp Neighborhood of RT #1 [28075, 31155] Replic_Relax T7_EssCb_Firm RVT-GII Intron_maturas2 HNHc Feature: gene Location: 28075-28695 bp Feature: domain Description: Replic_Relax Location: 28123-28588 bp Feature: domain Description: Replic_Relax Location: 28123-28588 bp Feature: gene Location: 28637-29098 bp Feature: domain Description: T7_EssCb_Firm Location: 28655-28955 bp Feature: domain Description: T7_EssCb_Firm Location: 28655-289 55 bp Feature: gene Location: 29215-31155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29545-30382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29 545-30382 bp Feature: domain Description: Intron_maturas2 Location: 30520-30811 bp Feature: domain Description: Intron_maturas2 Location: 30520-30811 bp Feature: domain Description: HNHc Note: nucleases Location: 30943-31102 bp Feature: domain Description: HNHc Note: nucleases Location: 309 43-31102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Replic_Relax (pfam13814), T7_EssCb_Firm (TIGR03928), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000148.1 Bacillus thuringiensis strain I13 I13_contig000148, whole genome shotgun sequence (32778 bp)
Overview 1 RT 1: 30258-32145 bp Neighborhood of RT #1 [30258, 32198] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 30258-32198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30588-31425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30588-31425 bp Feature: domain Description: Intron_maturas2 Location: 31563-31854 bp Feature: domain Description: Intron_maturas2 Location: 31563-31854 bp Feature: domain Description: HNHc Note: nucleases Location: 31986-32145 bp Feature: domain Description: HNHc Note: nucleases Location: 31986-32145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000079.1 Bacillus thuringiensis strain I13 I13_contig000079, whole genome shotgun sequence (95349 bp)
Overview 1 RT 1: 117-5370 bp Neighborhood of RT #1 [117, 5399] RVT-GII Intron_maturas2 HNHc PRK12896 CcmA Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 3545-4291 bp Feature: domain Description: PRK12896 Location: 3548-4286 bp Feature: domain Description: PRK12896 Location: 3548-4286 bp Feature: gene Location: 4497-5399 bp Feature: domain Description: CcmA Location: 4500-5370 bp Feature: domain Description: CcmA Location: 4500-5370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK12896 (methionine aminopeptidase; Reviewed), CcmA (COG4133)

Seq: NFEN01000195.1 Bacillus thuringiensis strain I13 I13_contig000195, whole genome shotgun sequence (10103 bp)
Overview 1 RT 1: 6398-9470 bp Neighborhood of RT #1 [6398, 9523] PRTRC_ThiF RVT-GII Intron_maturas2 HNHc Feature: gene Location: 6398-6769 bp Feature: gene Location: 6789-7331 bp Feature: domain Description: PRTRC_ThiF Location: 6852-7308 bp Feature: domain Description: PRTRC_ThiF Location: 6852-7308 bp Feature: gene Location: 7583-9523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7913-8750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7913-8750 bp Feature: domain Description: Intron_maturas2 Location: 8888-9179 bp Feature: domain Description: Intron_maturas2 Location: 8888-9179 bp Feature: domain Description: HNHc Note: nucleases Location: 9311-9470 bp Feature: domain Description: HNHc Note: nucleases Location: 9311-9470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRTRC_ThiF (TIGR03736), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000068.1 Bacillus thuringiensis strain I13 I13_contig000068, whole genome shotgun sequence (78990 bp)
Overview 1 RT 1: 581-3359 bp Neighborhood of RT #1 [581, 3367] RVT-GII Intron_maturas2 HNHc glpT DUF4027 Feature: gene Location: 581-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: gene Location: 2626-3123 bp Feature: domain Description: glpT Location: 2644-3115 bp Feature: domain Description: glpT Location: 2644-3115 bp Feature: gene Location: 3242-3367 bp Feature: domain Description: DUF4027 Location: 3254-3359 bp Feature: domain Description: DUF4027 Location: 3254-3359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT glpT (TIGR00712), DUF4027 (pfam13219), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000072.1 Bacillus thuringiensis strain I13 I13_contig000072, whole genome shotgun sequence (28563 bp)
Overview 1 RT 1: 117-3647 bp Neighborhood of RT #1 [117, 3712] RVT-GII Intron_maturas2 HNHc nicotinamidase_related Acetyltransf_8 Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 14 22-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2626-3141 bp Feature: domain Description: nicotinamidase_related Location: 2638-3088 bp Feature: domain Description: nicotinamidase_related Location: 2638-3088 bp Feature: gene Location: 3176-3712 bp Feature: domain Description: Acetyltransf_8 Location: 3218-3647 bp Feature: domain Description: Acetyltransf_8 Location: 3218-3647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), nicotinamidase_related (cd01014), Acetyltransf_8 (pfam13523)

Seq: NFEN01000052.1 Bacillus thuringiensis strain I13 I13_contig000052, whole genome shotgun sequence (91575 bp)
Overview 1 RT 1: 86990-90942 bp Neighborhood of RT #1 [86990, 90995] zf-HC2 DUF4179 DUF2812 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 86990-87967 bp Feature: domain Description: zf-HC2 Location: 87023-87098 bp Feature: domain Description: zf-HC2 Location: 87023-87098 bp Feature: domain Description: DUF4179 Location: 87302-87593 bp Feature: domain Description: DUF4179 Location: 87302-87593 bp Feature: gene Location: 88344-88895 bp Feature: domain Description: DUF2812 Location: 88347-88641 bp Feature: domain Description: DUF2812 Location: 88347-88641 bp Feature: gene Location: 89055-90995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89385-90222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89385-90222 bp Feature: domain Description: Intron_maturas2 Location: 90360-90651 bp Feature: domain Description: Intron_maturas2 Location: 90360-90651 bp Feature: domain Description: HNHc Note: nucleases Location: 90783-90942 bp Feature: domain Description: HNHc Note: nucleases Location: 90783-90942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-HC2 (pfam13490), DUF4179 (pfam13786), DUF2812 (pfam11193), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000075.1 Bacillus thuringiensis strain I13 I13_contig000075, whole genome shotgun sequence (20406 bp)
Overview 1 RT 1: 117-3890 bp Neighborhood of RT #1 [117, 3892] RVT-GII Intron_maturas2 HNHc DegV Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2638-2793 bp Feature: gene Location: 3086-3892 bp Feature: domain Description: DegV Location: 3107-3890 bp Feature: domain Description: DegV Location: 3107-3890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DegV (TIGR00762)

Seq: NFEN01000063.1 Bacillus thuringiensis strain I13 I13_contig000063, whole genome shotgun sequence (74608 bp)
Overview 1 RT 1: 581-4759 bp Neighborhood of RT #1 [581, 4848] RVT-GII Intron_maturas2 HNHc COG4362 BCCT Feature: gene Location: 581-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-17 48 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: Intron_maturas2 Location: 1886-217 7 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: gene Location: 2632-2919 bp Feature: domain Description: COG4362 Location: 2641-2917 bp Feature: domain Description: COG4362 Location: 2641-2917 bp Feature: gene Location: 3280-4848 bp Feature: domain Description: BCCT Location: 3316-4759 bp Feature: domain Description: BCCT Location: 3316-4759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4362 (Nitric oxide synthase, oxygenase domain ), BCCT (pfam02028), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000164.1 Bacillus thuringiensis strain I13 I13_contig000164, whole genome shotgun sequence (37486 bp)
Overview 1 RT 1: 32932-37317 bp Neighborhood of RT #1 [32932, 37370] AcrR MFS_MefA_like RVT-GII Intron_maturas2 HNHc Feature: gene Location: 32932-33567 bp Feature: domain Description: AcrR Location: 32956-33406 bp Feature: domain Description: AcrR Location: 32956-33406 bp Feature: gene Location: 33614-34861 bp Feature: domain Description: MFS_MefA_like Location: 33668-34841 bp Feature: domain Description: MFS_MefA_like Location: 33668-34841 bp Feature: gene Location: 35430-37370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35760-36597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35760-36597 bp Feature: domain Description: Intron_maturas2 Location: 36735-37026 bp Feature: domain Description: Intron_maturas2 Location: 36735-37026 bp Feature: domain Description: HNHc Note: nucleases Location: 37158-37317 bp Feature: domain Description: HNHc Note: nucleases Location: 37158-37317 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrR (COG1309), MFS_MefA_like (cd06173), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000217.1 Bacillus thuringiensis strain I13 I13_contig000217, whole genome shotgun sequence (4370 bp)
Overview 1 RT 1: 1-3737 bp Neighborhood of RT #1 [1, 3790] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-1733 bp Feature: gene Location: 1850-3790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2180-3017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2180-3017 bp Feature: domain Description: Intron_maturas2 Location: 3155-3446 bp Feature: domain Description: Intron_maturas2 Location: 3155-3446 bp Feature: domain Description: HNHc Note: nucleases Location: 3578-3737 bp Feature: domain Description: HNHc Note: nucleases Location: 3578-3737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000213.1 Bacillus thuringiensis strain I13 I13_contig000213, whole genome shotgun sequence (4819 bp)
Overview 1 RT 1: 1-4819 bp Neighborhood of RT #1 [1, 4819] KOG4768 RVT-GII HNHc Feature: gene Location: 1-705 bp Feature: domain Description: KOG4768 Location: 61-700 bp Feature: domain Description: KOG4768 Location: 61-700 bp Feature: gene Location: 1672-3462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1969-2665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1969-2665 bp Feature: domain Description: HNHc Note: nucleases Location: 3205-3337 bp Feature: domain Description: HNHc Note: nucleases Location: 320 5-3337 bp Feature: gene Location: 3528-3965 bp Feature: gene Location: 4638-4819 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), KOG4768 (KOG4768, Mitochondrial mRNA maturase )

Seq: NFEN01000220.1 Bacillus thuringiensis strain I13 I13_contig000220, whole genome shotgun sequence (13294 bp)
Overview 1 RT 1: 7602-13125 bp Neighborhood of RT #1 [7602, 13178] CetZ_tubulin-like CetZ_tubulin-like RVT-GII Intron_maturas2 HNHc Feature: gene Location: 7602-9056 bp Feature: domain Description: CetZ_tubulin-like Location: 7641-8019 bp Feature: domain Description: CetZ_tubulin-like Location: 7641-8019 bp Feature: domain Description: CetZ_tubulin-like Location: 8151-8505 bp Feature: domain Description: CetZ_tubulin-like Location: 8151-8505 bp Feature: gene Location: 9061-9483 bp Feature: gene Location: 11238-13178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11568-12405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11568-12405 bp Feature: domain Description: Intron_maturas2 Location: 12543-12834 bp Feature: domain Description: Intron_maturas2 Location: 12543-12834 bp Feature: domain Description: HNHc Note: nucleases Location: 12966-13125 bp Feature: domain Description: HNHc Note: nucleases Location: 12966-13125 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), CetZ_tubulin-like (cd02202)

Seq: NFEN01000085.1 Bacillus thuringiensis strain I13 I13_contig000085, whole genome shotgun sequence (163416 bp)
Overview 1 RT 1: 117-3730 bp 2 RT 2: 158269-162783 bp Neighborhood of RT #1 [117, 3738] RVT-GII Intron_maturas2 HNHc MPP_YhcR_N DUF3886 Neighborhood of RT #2 [158269, 162836] PRK13670 Arm-DNA-bind_4 Phage_int_SAM_3 INT_ICEBs1_C_like RVT-GII Intron_maturas2 HNHc Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422 -1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2638-3273 bp Feature: domain Description: MPP_YhcR_N Location: 2752-3274 bp Feature: domain Description: MPP_YhcR_N Location: 2752-3274 bp Feature: gene Location: 3475-3738 bp Feature: domain Description: DUF3886 Location: 3532-3730 bp Feature: domain Description: DUF3886 Location: 3532-3730 bp Feature: gene Location: 158269-159495 bp Feature: domain Description: PRK13670 Location: 158272-159466 bp Feature: domain Description: PRK13670 Location: 158272-159466 bp Feature: gene Location: 159645-160775 bp Feature: domain Description: Arm-DNA-bind_4 Location: 159675-159807 bp Feature: domain Description: Arm-DNA-bind_4 Location: 159675-159807 bp Feature: domain Description: Phage_int_SAM_3 Location: 159834-160002 bp Feature: domain Description: Phage_int_SAM_3 Location: 159834-160002 bp Feature: domain Description: INT_ICEBs1_C_like Location: 160161-160668 bp Feature: domain Description: INT_ICEBs1_C_like Location: 160161-160668 bp Feature: gene Location: 160896-162836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161226-162063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16122 6-162063 bp Feature: domain Description: Intron_maturas2 Location: 162201-162492 bp Feature: domain Description: Intron_maturas2 Location: 1622 01-162492 bp Feature: domain Description: HNHc Note: nucleases Location: 162624-162783 bp Feature: domain Description: HNHc Note: nucleases Location: 162624-162783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), MPP_YhcR_N (cd07412), DUF3886 (pfam13025), PRK13670 (nucleotidyltransferase), Arm-DNA-bind_4 (pfam14657), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189)

Seq: NFEN01000077.1 Bacillus thuringiensis strain I13 I13_contig000077, whole genome shotgun sequence (9416 bp)
Overview 1 RT 1: 117-4127 bp Neighborhood of RT #1 [117, 4168] RVT-GII Intron_maturas2 HNHc PRK03103 recomb_XerD INT_tnpA_C_Tn554 Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2628-2891 bp Feature: domain Description: PRK03103 Location: 2637-2883 bp Feature: domain Description: PRK03103 Location: 2637-2883 bp Feature: gene Location: 3071-4168 bp Feature: domain Description: recomb_XerD Location: 3188-3335 bp Feature: domain Description: recomb_XerD Location: 3188-3335 bp Feature: domain Description: INT_tnpA_C_Tn554 Location: 3620-4127 bp Feature: domain Description: INT_tnpA_C_Tn554 Location: 3620-4127 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK03103 (DNA polymerase IV; Reviewed), recomb_XerD (TIGR02225), INT_tnpA_C_Tn554 (cd01186)

Seq: NFEN01000216.1 Bacillus thuringiensis strain I13 I13_contig000216, whole genome shotgun sequence (23488 bp)
Overview 1 RT 1: 6634-13425 bp Neighborhood of RT #1 [6634, 13487] T_den_put_tspse DUF3854 RVT-GII HNHc LPD1 Feature: gene Location: 6634-7557 bp Feature: domain Description: T_den_put_tspse Location: 6676-7540 bp Feature: domain Description: T_den_put_tspse Location: 6676-7540 bp Feature: gene Location: 7669-8163 bp Feature: domain Description: DUF3854 Location: 7780-8134 bp Feature: domain Description: DUF3854 Location: 7780-8134 bp Feature: gene Location: 8287-10119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8599-9298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8599-9298 bp Feature: domain Description: HNHc Note: nucleases Location: 9838-10003 bp Feature: domain Description: HNHc Note: nucleases Location: 9838-10003 bp Feature: gene Location: 10892-11722 bp Feature: gene Location: 11712-13487 bp Feature: domain Description: LPD1 Location: 13236-13425 bp Feature: domain Description: LPD1 Location: 13236-13425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LPD1 (pfam18796), T_den_put_tspse (TIGR01784), DUF3854 (pfam12965), RVT-GII, HNHc (smart00507)

Seq: NFEN01000057.1 Bacillus thuringiensis strain I13 I13_contig000057, whole genome shotgun sequence (57356 bp)
Overview 1 RT 1: 53164-56723 bp Neighborhood of RT #1 [53164, 56776] DUF4250 RHH_3 PRK09419 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 53164-53640 bp Feature: domain Description: DUF4250 Location: 53221-53305 bp Feature: domain Description: DUF425 0 Location: 53221-53305 bp Feature: domain Description: RHH_3 Location: 53482-53611 bp Feature: domain Description: RHH_3 Location: 53482-53611 bp Feature: gene Location: 53766-54719 bp Feature: domain Description: PRK09419 Location: 53775-54714 bp Feature: domain Description: PRK09419 Location: 53775-54714 bp Feature: gene Location: 54836-56776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55166-56003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55166-56003 bp Feature: domain Description: Intron_maturas2 Location: 56141-56432 bp Feature: domain Description: Intron_maturas2 Location: 56141-56432 bp Feature: domain Description: HNHc Note: nucleases Location: 56564-56723 bp Feature: domain Description: HNHc Note: nucleases Location: 56564-56723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4250 (pfam14056), RHH_3 (pfam12651), PRK09419 (multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase/5'-nucleotidase), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000082.1 Bacillus thuringiensis strain I13 I13_contig000082, whole genome shotgun sequence (48845 bp)
Overview 1 RT 1: 117-3471 bp Neighborhood of RT #1 [117, 3515] RVT-GII Intron_maturas2 HNHc NIPSNAP RimL Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2626-2946 bp Feature: domain Description: NIPSNAP Location: 2650-2854 bp Feature: domain Description: NIPSNAP Location: 26 50-2854 bp Feature: gene Location: 2919-3515 bp Feature: domain Description: RimL Location: 3174-3471 bp Feature: domain Description: RimL Location: 3174-3471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), NIPSNAP (pfam07978), RimL (COG1670)

Seq: NFEN01000174.1 Bacillus thuringiensis strain I13 I13_contig000174, whole genome shotgun sequence (80573 bp)
Overview 1 RT 1: 76215-80404 bp Neighborhood of RT #1 [76215, 80457] B_an_ocin RVT-GII Intron_maturas2 HNHc Feature: gene Location: 76215-76541 bp Feature: domain Description: B_an_ocin Location: 76224-76497 bp Feature: domain Description: B_an_ocin Location: 76224-76497 bp Feature: gene Location: 77031-77516 bp Feature: gene Location: 78517-80457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78847-79684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78847-79684 bp Feature: domain Description: Intron_maturas2 Location: 79822-80113 bp Feature: domain Description: Intron_maturas2 Location: 79822-80113 bp Feature: domain Description: HNHc Note: nucleases Location: 80245-80404 bp Feature: domain Description: HNHc Note: nucleases Location: 80245-80404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT B_an_ocin (TIGR03601), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000228.1 Bacillus thuringiensis strain I13 I13_contig000228, whole genome shotgun sequence (2763 bp)
Overview 1 RT 1: 235-2035 bp Neighborhood of RT #1 [235, 2109] RVT-GII GIIM HNHc Feature: gene Location: 235-2109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535-1240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535-1240 bp Feature: domain Description: GIIM Note: maturase Location: 1354-1522 bp Feature: domain Description: GIIM Note: maturase Location: 1354-1522 bp Feature: domain Description: HNHc Note: nucleases Location: 1870-2035 bp Feature: domain Description: HNHc Note: nucleases Location: 1870-2035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NFEN01000223.1 Bacillus thuringiensis strain I13 I13_contig000223, whole genome shotgun sequence (5050 bp)
Overview 1 RT 1: 1-2905 bp Neighborhood of RT #1 [1, 2905] RVT-GII Feature: gene Location: 1-941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-940 bp Feature: gene Location: 1542-2687 bp Feature: gene Location: 2705-2905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NFEN01000078.1 Bacillus thuringiensis strain I13 I13_contig000078, whole genome shotgun sequence (44175 bp)
Overview 1 RT 1: 117-3382 bp Neighborhood of RT #1 [117, 3382] RVT-GII Intron_maturas2 HNHc PadR Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2668-2982 bp Feature: domain Description: PadR Location: 2716-2926 bp Feature: domain Description: PadR Location: 2716-2926 bp Feature: gene Location: 3137-3382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PadR (pfam03551)

Seq: NFEN01000084.1 Bacillus thuringiensis strain I13 I13_contig000084, whole genome shotgun sequence (6660 bp)
Overview 1 RT 1: 117-4980 bp Neighborhood of RT #1 [117, 5066] RVT-GII Intron_maturas2 HNHc Bacillus_HBL Chondroitinas_B Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2638-3174 bp Feature: domain Description: Bacillus_HBL Location: 2755-3172 bp Feature: domain Description: Bacillus_HBL Location: 2755-31 72 bp Feature: gene Location: 4542-5066 bp Feature: domain Description: Chondroitinas_B Location: 4740-4980 bp Feature: domain Description: Chondroitinas_B Location: 4740-4980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bacillus_HBL (pfam05791), Chondroitinas_B (pfam14592)

Seq: NFEN01000219.1 Bacillus thuringiensis strain I13 I13_contig000219, whole genome shotgun sequence (5732 bp)
Overview 1 RT 1: 947-5563 bp Neighborhood of RT #1 [947, 5616] SLH SLH SLH RVT-GII Intron_maturas2 HNHc Feature: gene Location: 947-2422 bp Feature: domain Description: SLH Location: 1142-1271 bp Feature: domain Description: SLH Location: 1142-1271 bp Feature: domain Description: SLH Location: 1328-1454 bp Feature: domain Description: SLH Location: 132 8-1454 bp Feature: domain Description: SLH Location: 1502-1628 bp Feature: domain Description: SLH Location: 1502-1628 bp Feature: gene Location: 2547-3095 bp Feature: gene Location: 3676-5616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4006-4843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4006-4843 bp Feature: domain Description: Intron_maturas2 Location: 4981-5272 bp Feature: domain Description: Intron_maturas2 Location: 4981-5272 bp Feature: domain Description: HNHc Note: nucleases Location: 5404-5563 bp Feature: domain Description: HNHc Note: nucleases Location: 5404-5563 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SLH (pfam00395)

Seq: NFEN01000074.1 Bacillus thuringiensis strain I13 I13_contig000074, whole genome shotgun sequence (11234 bp)
Overview 1 RT 1: 117-3655 bp Neighborhood of RT #1 [117, 3655] RVT-GII Intron_maturas2 HNHc FtsK_SpoIIIE Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2626-3357 bp Feature: domain Description: FtsK_SpoIIIE Location: 3004-3334 bp Feature: domain Description: FtsK_SpoIIIE Location: 3004-33 34 bp Feature: gene Location: 3473-3655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), FtsK_SpoIIIE (pfam01580)

Seq: NFEN01000081.1 Bacillus thuringiensis strain I13 I13_contig000081, whole genome shotgun sequence (9963 bp)
Overview 1 RT 1: 117-5232 bp Neighborhood of RT #1 [117, 5232] RVT-GII Intron_maturas2 HNHc HTH_XRE Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 3304-3648 bp Feature: domain Description: HTH_XRE Location: 3319-3490 bp Feature: domain Description: HTH_XRE Location: 3319-34 90 bp Feature: gene Location: 4087-5232 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HTH_XRE (smart00530)

Seq: NFEN01000047.1 Bacillus thuringiensis strain I13 I13_contig000047, whole genome shotgun sequence (56525 bp)
Overview 1 RT 1: 50922-56356 bp Neighborhood of RT #1 [50922, 56409] P-type_ATPase_Ca_prok P-type_ATPase_SERCA YicC_N RVT-GII Intron_maturas2 HNHc Feature: gene Location: 50922-53645 bp Feature: domain Description: P-type_ATPase_Ca_prok Location: 50988-53184 bp Feature: domain Description: P-type_ATPase_Ca_prok Location: 50988-53184 bp Feature: domain Description: P-type_ATPase_SERCA Location: 53310-53565 bp Feature: domain Description: P-type_ATPase_SERCA Location: 53310-535 65 bp Feature: gene Location: 53745-53894 bp Feature: domain Description: YicC_N Location: 53751-53895 bp Feature: domain Description: YicC_N Location: 53751-53895 bp Feature: gene Location: 54469-56409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54799-55636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54799-55636 bp Feature: domain Description: Intron_maturas2 Location: 55774-56065 bp Feature: domain Description: Intron_maturas2 Location: 55774-56065 bp Feature: domain Description: HNHc Note: nucleases Location: 56197-56356 bp Feature: domain Description: HNHc Note: nucleases Location: 56197-5635 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P-type_ATPase_Ca_prok (cd02089), P-type_ATPase_SERCA (cd02083), YicC_N (pfam03755), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000065.1 Bacillus thuringiensis strain I13 I13_contig000065, whole genome shotgun sequence (5386 bp)
Overview 1 RT 1: 581-4169 bp Neighborhood of RT #1 [581, 4711] RVT-GII Intron_maturas2 HNHc Bacillus_HBL Feature: gene Location: 581-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: gene Location: 2641-3420 bp Feature: gene Location: 3482-4711 bp Feature: domain Description: Bacillus_HBL Location: 3617-4169 bp Feature: domain Description: Bacillus_HBL Location: 36 17-4169 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bacillus_HBL (pfam05791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000232.1 Bacillus thuringiensis strain I13 I13_contig000232, whole genome shotgun sequence (16707 bp)
Overview 1 RT 1: 117-5144 bp Neighborhood of RT #1 [117, 5176] RVT-GII Intron_maturas2 HNHc Tar CPBP Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2638-3720 bp Feature: domain Description: Tar Location: 3010-3721 bp Feature: domain Description: Tar Location: 3010-37 21 bp Feature: gene Location: 4691-5176 bp Feature: domain Description: CPBP Location: 4838-5144 bp Feature: domain Description: CPBP Location: 4838-5144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Tar (COG0840), CPBP

Seq: NFEN01000210.1 Bacillus thuringiensis strain I13 I13_contig000210, whole genome shotgun sequence (29204 bp)
Overview 1 RT 1: 25485-28571 bp Neighborhood of RT #1 [25485, 28624] ThiF RVT-GII Intron_maturas2 HNHc Feature: gene Location: 25485-25802 bp Feature: gene Location: 25947-26567 bp Feature: domain Description: ThiF Location: 25950-26493 bp Feature: domain Description: ThiF Location: 25950-26493 bp Feature: gene Location: 26684-28624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27014-27851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27014-27851 bp Feature: domain Description: Intron_maturas2 Location: 27989-28280 bp Feature: domain Description: Intron_maturas2 Location: 27989-28280 bp Feature: domain Description: HNHc Note: nucleases Location: 28412-28571 bp Feature: domain Description: HNHc Note: nucleases Location: 28412-28571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ThiF (pfam00899), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000256.1 Bacillus thuringiensis strain I13 I13_contig000256, whole genome shotgun sequence (12524 bp)
Overview 1 RT 1: 511-2581 bp 2 RT 2: 9630-12251 bp Neighborhood of RT #1 [511, 2589] RVT-GII GIIM Doc doc_partner Neighborhood of RT #2 [9630, 12442] RVT-GII GIIM Feature: gene Location: 511-1785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 712-1327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 712-1327 bp Feature: domain Description: GIIM Note: maturase Location: 1387-1594 bp Feature: domain Description: GIIM Note: maturase Location: 1387-1594 bp Feature: gene Location: 1866-2267 bp Feature: domain Description: Doc Location: 1881-2253 bp Feature: domain Description: Doc Location: 1881-2253 bp Feature: gene Location: 2305-2589 bp Feature: domain Description: doc_partner Location: 2350-2581 bp Feature: domain Description: doc_partner Location: 2350-2581 bp Feature: gene Location: 9630-9884 bp Feature: gene Location: 9986-10570 bp Feature: gene Location: 11168-12442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11369-11984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11369-11984 bp Feature: domain Description: GIIM Note: maturase Location: 12044-12251 bp Feature: domain Description: GIIM Note: maturase Location: 12044-12251 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Doc (COG3654), doc_partner (TIGR02609), RVT-GII, GIIM (pfam08388)

Seq: NFEN01000018.1 Bacillus thuringiensis strain I13 I13_contig000018, whole genome shotgun sequence (20335 bp)
Overview 1 RT 1: 16107-20166 bp Neighborhood of RT #1 [16107, 20219] MarR glpT RVT-GII Intron_maturas2 HNHc Feature: gene Location: 16107-16565 bp Feature: domain Description: MarR Location: 16167-16521 bp Feature: domain Description: MarR Location: 16167-16521 bp Feature: gene Location: 16835-17698 bp Feature: domain Description: glpT Location: 16853-17699 bp Feature: domain Description: glpT Location: 16853-17699 bp Feature: gene Location: 18279-20219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18609-19446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18609-19446 bp Feature: domain Description: Intron_maturas2 Location: 19584-19875 bp Feature: domain Description: Intron_maturas2 Location: 19584-19875 bp Feature: domain Description: HNHc Note: nucleases Location: 20007-20166 bp Feature: domain Description: HNHc Note: nucleases Location: 20007-20166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MarR (pfam01047), glpT (TIGR00712), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000073.1 Bacillus thuringiensis strain I13 I13_contig000073, whole genome shotgun sequence (162493 bp)
Overview 1 RT 1: 117-5345 bp 2 RT 2: 158816-161860 bp Neighborhood of RT #1 [117, 5345] RVT-GII Intron_maturas2 HNHc CwlA SH3_3 SLH SLH SLH Neighborhood of RT #2 [158816, 161913] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2773-4080 bp Feature: domain Description: CwlA Location: 2812-3304 bp Feature: domain Description: CwlA Location: 2812-3304 bp Feature: domain Description: SH3_3 Location: 3364-3490 bp Feature: domain Description: SH3_3 Location: 3364-3490 bp Feature: domain Description: SLH Location: 3562-3679 bp Feature: domain Description: SLH Location: 3562-3679 bp Feature: domain Description: SLH Location: 3724-3853 bp Feature: domain Description: SLH Location: 3724-3853 bp Feature: domain Description: SLH Location: 3916-4042 bp Feature: domain Description: SLH Location: 3916-4042 bp Feature: gene Location: 4887-5345 bp Feature: gene Location: 158816-159094 bp Feature: gene Location: 159599-159856 bp Feature: gene Location: 159973-161913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160303-161140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160303-161140 bp Feature: domain Description: Intron_maturas2 Location: 161278-161569 bp Feature: domain Description: Intron_maturas2 Location: 161278-161569 bp Feature: domain Description: HNHc Note: nucleases Location: 161701-161860 bp Feature: domain Description: HNHc Note: nucleases Location: 161701-161860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), CwlA (COG5632), SH3_3 (pfam08239), SLH (pfam00395)

Seq: NFEN01000083.1 Bacillus thuringiensis strain I13 I13_contig000083, whole genome shotgun sequence (14216 bp)
Overview 1 RT 1: 117-4320 bp Neighborhood of RT #1 [117, 4325] RVT-GII Intron_maturas2 HNHc PRK06172 thiol_BshB2 Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 142 2-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2807-3550 bp Feature: domain Description: PRK06172 Location: 2810-3545 bp Feature: domain Description: PRK06172 Location: 2810-3545 bp Feature: gene Location: 3663-4325 bp Feature: domain Description: thiol_BshB2 Location: 3672-4320 bp Feature: domain Description: thiol_BshB2 Location: 3672-4320 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK06172 (SDR family oxidoreductase), thiol_BshB2 (TIGR04000)

Seq: NFEN01000067.1 Bacillus thuringiensis strain I13 I13_contig000067, whole genome shotgun sequence (7049 bp)
Overview 1 RT 1: 581-4866 bp Neighborhood of RT #1 [581, 4866] RVT-GII Intron_maturas2 HNHc Replic_Relax Feature: gene Location: 581-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: gene Location: 3167-4444 bp Feature: domain Description: Replic_Relax Location: 3251-3797 bp Feature: domain Description: Replic_Relax Location: 3251-3797 bp Feature: gene Location: 4552-4866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Replic_Relax (pfam13814), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000066.1 Bacillus thuringiensis strain I13 I13_contig000066, whole genome shotgun sequence (49539 bp)
Overview 1 RT 1: 581-3695 bp Neighborhood of RT #1 [581, 3700] RVT-GII Intron_maturas2 HNHc PRK11820 PRK04323 Feature: gene Location: 581-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: gene Location: 2638-3369 bp Feature: domain Description: PRK11820 Location: 2641-3367 bp Feature: domain Description: PRK11820 Location: 2641-3367 bp Feature: gene Location: 3437-3700 bp Feature: domain Description: PRK04323 Location: 3440-3695 bp Feature: domain Description: PRK04323 Location: 344 0-3695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11820 (YicC family protein), PRK04323 (hypothetical protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000027.1 Bacillus thuringiensis strain I13 I13_contig000027, whole genome shotgun sequence (10240 bp)
Overview 1 RT 1: 7911-9967 bp Neighborhood of RT #1 [7911, 10158] Phr_nterm RVT-GII GIIM Feature: gene Location: 7911-8069 bp Feature: domain Description: Phr_nterm Location: 7920-7986 bp Feature: domain Description: Phr_nterm Location: 7920-7986 bp Feature: gene Location: 8161-8343 bp Feature: gene Location: 8884-10158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9085-9700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9085-9700 bp Feature: domain Description: GIIM Note: maturase Location: 9760-9967 bp Feature: domain Description: GIIM Note: maturase Location: 9760-9967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phr_nterm (TIGR04429), RVT-GII, GIIM (pfam08388)

Seq: NFEN01000214.1 Bacillus thuringiensis strain I13 I13_contig000214, whole genome shotgun sequence (8619 bp)
Overview 1 RT 1: 106-4339 bp Neighborhood of RT #1 [106, 7581] RVT-GII HNHc CwlT_like TrbL Feature: gene Location: 106-1911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400-1096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400-1096 bp Feature: domain Description: HNHc Note: nucleases Location: 1657-1795 bp Feature: domain Description: HNHc Note: nucleases Location: 1657-1795 bp Feature: gene Location: 2585-3580 bp Feature: domain Description: CwlT_like Location: 3434-3557 bp Feature: domain Description: CwlT_like Location: 3434-3557 bp Feature: gene Location: 3577-7581 bp Feature: domain Description: TrbL Location: 4072-4339 bp Feature: domain Description: TrbL Location: 4072-4339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), CwlT_like, TrbL (pfam04610)

Seq: NFEN01000107.1 Bacillus thuringiensis strain I13 I13_contig000107, whole genome shotgun sequence (8283 bp)
Overview 1 RT 1: 3988-8209 bp Neighborhood of RT #1 [3988, 8283] rpsA TraG-D_C Ftsk_gamma RVT-GII GIIM HNHc Feature: gene Location: 3988-4971 bp Feature: domain Description: rpsA Location: 4255-4792 bp Feature: domain Description: rpsA Location: 4255-47 92 bp Feature: gene Location: 5229-6671 bp Feature: domain Description: TraG-D_C Location: 5241-5559 bp Feature: domain Description: TraG-D_C Location: 5241-5559 bp Feature: domain Description: Ftsk_gamma Location: 5994-6153 bp Feature: domain Description: Ftsk_gamma Location: 5994-6153 bp Feature: gene Location: 6904-8283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6913-7414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6913-7414 bp Feature: domain Description: GIIM Note: maturase Location: 7528-7696 bp Feature: domain Description: GIIM Note: maturase Location: 7528-7696 bp Feature: domain Description: HNHc Note: nucleases Location: 8044-8209 bp Feature: domain Description: HNHc Note: nucleases Location: 8044-8209 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NFEN01000080.1 Bacillus thuringiensis strain I13 I13_contig000080, whole genome shotgun sequence (42617 bp)
Overview 1 RT 1: 117-3137 bp Neighborhood of RT #1 [117, 3151] RVT-GII Intron_maturas2 HNHc Tautomerase_2 YurZ Feature: gene Location: 117-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-1284 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: Intron_maturas2 Location: 1422-1713 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1845-2004 bp Feature: gene Location: 2639-2839 bp Feature: domain Description: Tautomerase_2 Location: 2642-2795 bp Feature: domain Description: Tautomerase_2 Location: 2642-2795 bp Feature: gene Location: 2843-3151 bp Feature: domain Description: YurZ Location: 2858-3137 bp Feature: domain Description: YurZ Location: 2858-3137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Tautomerase_2 (pfam14552), YurZ (COG0599)

Seq: NFEN01000069.1 Bacillus thuringiensis strain I13 I13_contig000069, whole genome shotgun sequence (8184 bp)
Overview 1 RT 1: 581-3656 bp Neighborhood of RT #1 [581, 3679] RVT-GII Intron_maturas2 HNHc Tar SASP Feature: gene Location: 581-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: gene Location: 2638-3297 bp Feature: domain Description: Tar Location: 2644-3289 bp Feature: domain Description: Tar Location: 2644-3289 bp Feature: gene Location: 3464-3679 bp Feature: domain Description: SASP Location: 3494-3656 bp Feature: domain Description: SASP Location: 349 4-3656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tar (COG0840), SASP (pfam00269), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000212.1 Bacillus thuringiensis strain I13 I13_contig000212, whole genome shotgun sequence (5383 bp)
Overview 1 RT 1: 107-4658 bp Neighborhood of RT #1 [107, 4687] RVT-GII HNHc RVT-GII Intron_maturas2 HNHc Feature: gene Location: 107-1897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404-1100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404-1100 bp Feature: domain Description: HNHc Note: nucleases Location: 1640-1772 bp Feature: domain Description: HNHc Note: nucleases Location: 1640-1772 bp Feature: gene Location: 2864-4687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3134-3962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3134-3962 bp Feature: domain Description: Intron_maturas2 Location: 4034-4352 bp Feature: domain Description: Intron_maturas2 Location: 4034-4352 bp Feature: domain Description: HNHc Note: nucleases Location: 4505-4658 bp Feature: domain Description: HNHc Note: nucleases Location: 450 5-4658 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), Intron_maturas2 (pfam01348)

Seq: NFEN01000159.1 Bacillus thuringiensis strain I13 I13_contig000159, whole genome shotgun sequence (41912 bp)
Overview 1 RT 1: 12490-17096 bp Neighborhood of RT #1 [12490, 17143] RVT-GII HNHc PRK03113 Feature: gene Location: 12490-12690 bp Feature: gene Location: 12766-13002 bp Feature: gene Location: 13788-15695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14088-14799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14088-14799 bp Feature: domain Description: HNHc Note: nucleases Location: 15390-15540 bp Feature: domain Description: HNHc Note: nucleases Location: 15390-15540 bp Feature: gene Location: 15917-16672 bp Feature: gene Location: 16706-17143 bp Feature: domain Description: PRK03113 Location: 16724-17096 bp Feature: domain Description: PRK03113 Location: 16724-17096 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), PRK03113 (putative disulfide oxidoreductase; Provisional)

Seq: NFEN01000088.1 Bacillus thuringiensis strain I13 I13_contig000088, whole genome shotgun sequence (71882 bp)
Overview 1 RT 1: 68136-71249 bp Neighborhood of RT #1 [68136, 71302] EFh_HEF_SCGN RVT-GII Intron_maturas2 HNHc Feature: gene Location: 68136-68252 bp Feature: gene Location: 68718-69200 bp Feature: domain Description: EFh_HEF_SCGN Location: 68796-69051 bp Feature: domain Description: EFh_HEF_SCGN Location: 68796-69051 bp Feature: gene Location: 69362-71302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69692-70529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69692-7052 9 bp Feature: domain Description: Intron_maturas2 Location: 70667-70958 bp Feature: domain Description: Intron_maturas2 Location: 70667-70958 bp Feature: domain Description: HNHc Note: nucleases Location: 71090-71249 bp Feature: domain Description: HNHc Note: nucleases Location: 71090-71249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EFh_HEF_SCGN (cd16178), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000199.1 Bacillus thuringiensis strain I13 I13_contig000199, whole genome shotgun sequence (7367 bp)
Overview 1 RT 1: 1-7362 bp Neighborhood of RT #1 [1, 7367] RVT-GII Intron_maturas2 HNHc RVT-GII HNHc KOG4768 Feature: gene Location: 1-182 bp Feature: gene Location: 855-1061 bp Feature: gene Location: 1162-2979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1432-2254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1432-2254 bp Feature: domain Description: Intron_maturas2 Location: 2335-2629 bp Feature: domain Description: Intron_maturas2 Location: 2335-2629 bp Feature: domain Description: HNHc Note: nucleases Location: 2776-2950 bp Feature: domain Description: HNHc Note: nucleases Location: 2776-2950 bp Feature: gene Location: 3571-3840 bp Feature: gene Location: 3906-5696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4203-4899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4203-4899 bp Feature: domain Description: HNHc Note: nucleases Location: 5439-5571 bp Feature: domain Description: HNHc Note: nucleases Location: 5439-5571 bp Feature: gene Location: 6663-7367 bp Feature: domain Description: KOG4768 Location: 6723-7362 bp Feature: domain Description: KOG4768 Location: 6723-7362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), KOG4768 (KOG4768, Mitochondrial mRNA maturase )

Seq: NFEN01000224.1 Bacillus thuringiensis strain I13 I13_contig000224, whole genome shotgun sequence (15571 bp)
Overview 1 RT 1: 1-3091 bp Neighborhood of RT #1 [1, 3091] RVT-GII Feature: gene Location: 1-941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-940 bp Feature: gene Location: 1542-2687 bp Feature: gene Location: 2705-3091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NFEN01000208.1 Bacillus thuringiensis strain I13 I13_contig000208, whole genome shotgun sequence (10445 bp)
Overview 1 RT 1: 299-10445 bp Neighborhood of RT #1 [299, 10445] NlpD Spr RVT-GII Intron_maturas2 HNHc CwlT_like RVT-GII HNHc CwlT_like Feature: gene Location: 299-874 bp Feature: gene Location: 891-1766 bp Feature: domain Description: NlpD Location: 906-1335 bp Feature: domain Description: NlpD Location: 906-1335 bp Feature: domain Description: Spr Location: 1371-1707 bp Feature: domain Description: Spr Location: 1371-1707 bp Feature: gene Location: 1926-3749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2190-3024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2190-3024 bp Feature: domain Description: Intron_maturas2 Location: 3093-3432 bp Feature: domain Description: Intron_maturas2 Location: 3093-3432 bp Feature: domain Description: HNHc Note: nucleases Location: 3570-3726 bp Feature: domain Description: HNHc Note: nucleases Location: 3570-3726 bp Feature: gene Location: 4325-4642 bp Feature: domain Description: CwlT_like Location: 4367-4631 bp Feature: domain Description: CwlT_like Location: 4367-4631 bp Feature: gene Location: 4758-6563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5052-5748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5052-5748 bp Feature: domain Description: HNHc Note: nucleases Location: 6309-6447 bp Feature: domain Description: HNHc Note: nucleases Location: 6309-6447 bp Feature: gene Location: 7237-8232 bp Feature: domain Description: CwlT_like Location: 8086-8209 bp Feature: domain Description: CwlT_like Location: 8086-8209 bp Feature: gene Location: 8229-10445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), NlpD (COG0739), Spr (COG0791), CwlT_like

Seq: NFEN01000031.1 Bacillus thuringiensis strain I13 I13_contig000031, whole genome shotgun sequence (39873 bp)
Overview 1 RT 1: 36140-39240 bp Neighborhood of RT #1 [36140, 39293] DnaD_dom RVT-GII Intron_maturas2 HNHc Feature: gene Location: 36140-36922 bp Feature: domain Description: DnaD_dom Location: 36668-36851 bp Feature: domain Description: DnaD_dom Location: 36668-36851 bp Feature: gene Location: 37012-37138 bp Feature: gene Location: 37353-39293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37683-38520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37683-38520 bp Feature: domain Description: Intron_maturas2 Location: 38658-38949 bp Feature: domain Description: Intron_maturas2 Location: 38658-38949 bp Feature: domain Description: HNHc Note: nucleases Location: 39081-39240 bp Feature: domain Description: HNHc Note: nucleases Location: 39081-39240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DnaD_dom (TIGR01446), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000192.1 Bacillus thuringiensis strain I13 I13_contig000192, whole genome shotgun sequence (19832 bp)
Overview 1 RT 1: 10002-15753 bp Neighborhood of RT #1 [10002, 15782] RVT-GII HNHc LPD1 DUF3854 Feature: gene Location: 10002-11093 bp Feature: gene Location: 11528-11782 bp Feature: gene Location: 11814-13610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12108-12804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12108-12804 bp Feature: domain Description: HNHc Note: nucleases Location: 13404-13479 bp Feature: domain Description: HNHc Note: nucleases Location: 13404-13479 bp Feature: gene Location: 13682-14479 bp Feature: domain Description: LPD1 Location: 14228-14423 bp Feature: domain Description: LPD1 Location: 14228-14423 bp Feature: gene Location: 14469-15782 bp Feature: domain Description: DUF3854 Location: 15414-15753 bp Feature: domain Description: DUF3854 Location: 15414-157 53 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), LPD1 (pfam18796), DUF3854 (pfam12965)

Seq: NFEN01000197.1 Bacillus thuringiensis strain I13 I13_contig000197, whole genome shotgun sequence (7404 bp)
Overview 1 RT 1: 3760-7235 bp Neighborhood of RT #1 [3760, 7288] NO_synthase RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3760-3946 bp Feature: gene Location: 3979-4863 bp Feature: domain Description: NO_synthase Location: 3991-4768 bp Feature: domain Description: NO_synthase Location: 3991-4768 bp Feature: gene Location: 5348-7288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5678-6515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5678-6515 bp Feature: domain Description: Intron_maturas2 Location: 6653-6944 bp Feature: domain Description: Intron_maturas2 Location: 6653-6944 bp Feature: domain Description: HNHc Note: nucleases Location: 7076-7235 bp Feature: domain Description: HNHc Note: nucleases Location: 7076-7235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NO_synthase (pfam02898), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000200.1 Bacillus thuringiensis strain I13 I13_contig000200, whole genome shotgun sequence (2763 bp)
Overview 1 RT 1: 655-2455 bp Neighborhood of RT #1 [655, 2529] RVT-GII GIIM HNHc Feature: gene Location: 655-2529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 955-1660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 955-1660 bp Feature: domain Description: GIIM Note: maturase Location: 1774-1942 bp Feature: domain Description: GIIM Note: maturase Location: 1774-1942 bp Feature: domain Description: HNHc Note: nucleases Location: 2290-2455 bp Feature: domain Description: HNHc Note: nucleases Location: 2290-2455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NFEN01000257.1 Bacillus thuringiensis strain I13 I13_contig000257, whole genome shotgun sequence (5383 bp)
Overview 1 RT 1: 697-5152 bp Neighborhood of RT #1 [697, 5277] RVT-GII Intron_maturas2 HNHc RVT-GII HNHc Feature: gene Location: 697-2520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 967-1795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 967-1795 bp Feature: domain Description: Intron_maturas2 Location: 1867-2185 bp Feature: domain Description: Intron_maturas2 Location: 1867-2185 bp Feature: domain Description: HNHc Note: nucleases Location: 2338-2491 bp Feature: domain Description: HNHc Note: nucleases Location: 2338-2491 bp Feature: gene Location: 3487-5277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3784-4480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3784-4480 bp Feature: domain Description: HNHc Note: nucleases Location: 5020-5152 bp Feature: domain Description: HNHc Note: nucleases Location: 5020-5152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), Intron_maturas2 (pfam01348)

Seq: NFEN01000071.1 Bacillus thuringiensis strain I13 I13_contig000071, whole genome shotgun sequence (100711 bp)
Overview 1 RT 1: 581-4344 bp 2 RT 2: 95881-100078 bp Neighborhood of RT #1 [581, 4637] RVT-GII Intron_maturas2 HNHc DUF4879 HTH_MerR-like_sg1 UbiE Neighborhood of RT #2 [95881, 100131] AcoR RVT-GII Intron_maturas2 HNHc Feature: gene Location: 581-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: gene Location: 2638-2907 bp Feature: domain Description: DUF4879 Location: 2653-2902 bp Feature: domain Description: DUF4879 Location: 2653-2902 bp Feature: gene Location: 3414-4637 bp Feature: domain Description: HTH_MerR-like_sg1 Location: 3417-3729 bp Feature: domain Description: HTH_MerR-like_sg1 Location: 3417-3729 bp Feature: domain Description: UbiE Location: 4074-4344 bp Feature: domain Description: UbiE Location: 4074-4344 bp Feature: gene Location: 95881-97731 bp Feature: domain Description: AcoR Location: 95905-97729 bp Feature: domain Description: AcoR Location: 95905-97729 bp Feature: gene Location: 97854-97967 bp Feature: gene Location: 98191-100131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98521-99358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98521-99358 bp Feature: domain Description: Intron_maturas2 Location: 99496-99787 bp Feature: domain Description: Intron_maturas2 Location: 99496-99787 bp Feature: domain Description: HNHc Note: nucleases Location: 99919-100078 bp Feature: domain Description: HNHc Note: nucleases Location: 99919-100078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4879 (pfam16219), HTH_MerR-like_sg1 (cd04777), UbiE (COG2226), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), AcoR (COG3284)

Seq: NFEN01000091.1 Bacillus thuringiensis strain I13 I13_contig000091, whole genome shotgun sequence (18545 bp)
Overview 1 RT 1: 14232-17912 bp Neighborhood of RT #1 [14232, 17965] SIR2-like DUF2512 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 14232-15143 bp Feature: domain Description: SIR2-like Location: 14322-15015 bp Feature: domain Description: SIR2-like Location: 14322-15015 bp Feature: gene Location: 15295-15732 bp Feature: domain Description: DUF2512 Location: 15304-15700 bp Feature: domain Description: DUF2512 Location: 15304-15700 bp Feature: gene Location: 16025-17965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16355-17192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16355-17192 bp Feature: domain Description: Intron_maturas2 Location: 17330-17621 bp Feature: domain Description: Intron_maturas2 Location: 17330-1762 1 bp Feature: domain Description: HNHc Note: nucleases Location: 17753-17912 bp Feature: domain Description: HNHc Note: nucleases Location: 17753-17912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIR2-like (cd01406), DUF2512 (pfam10710), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000064.1 Bacillus thuringiensis strain I13 I13_contig000064, whole genome shotgun sequence (3217 bp)
Overview 1 RT 1: 581-3185 bp Neighborhood of RT #1 [581, 3217] RVT-GII Intron_maturas2 HNHc PolY_Pol_V_umuC Feature: gene Location: 581-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: gene Location: 2600-3217 bp Feature: domain Description: PolY_Pol_V_umuC Location: 2603-3185 bp Feature: domain Description: PolY_Pol_V_umuC Location: 2603-3185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_Pol_V_umuC (cd01700), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFEN01000249.1 Bacillus thuringiensis strain I13 I13_contig000249, whole genome shotgun sequence (7026 bp)
Overview 1 RT 1: 924-7026 bp Neighborhood of RT #1 [924, 7026] TraC-F-type RVT-GII HNHc TraC-F-type Feature: gene Location: 924-1838 bp Feature: gene Location: 1841-2821 bp Feature: domain Description: TraC-F-type Location: 2270-2744 bp Feature: domain Description: TraC-F-type Location: 2270-2744 bp Feature: gene Location: 3550-5382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3850-4555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3850-4555 bp Feature: domain Description: HNHc Note: nucleases Location: 5134-5266 bp Feature: domain Description: HNHc Note: nucleases Location: 5134-5266 bp Feature: gene Location: 5674-6642 bp Feature: domain Description: TraC-F-type Location: 5701-6481 bp Feature: domain Description: TraC-F-type Location: 5701-64 81 bp Feature: gene Location: 6673-7026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), RVT-GII, HNHc (smart00507)

Seq: NFEN01000070.1 Bacillus thuringiensis strain I13 I13_contig000070, whole genome shotgun sequence (4654 bp)
Overview 1 RT 1: 581-3593 bp Neighborhood of RT #1 [581, 4599] RVT-GII Intron_maturas2 HNHc HTH_28 HTH_28 Feature: gene Location: 581-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911-1748 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: Intron_maturas2 Location: 1886-2177 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: domain Description: HNHc Note: nucleases Location: 2309-2468 bp Feature: gene Location: 2654-3211 bp Feature: gene Location: 3245-4599 bp Feature: domain Description: HTH_28 Location: 3269-3407 bp Feature: domain Description: HTH_28 Location: 3269-3407 bp Feature: domain Description: HTH_28 Location: 3434-3593 bp Feature: domain Description: HTH_28 Location: 3434-3593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)