myRT

myRT report for GCA_002147805.1_ASM214780v1

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Seq: MOOG01000065.1 Bacillus thuringiensis serovar leesis strain BGSC 4AK1 contig000065, whole genome shotgun sequence (64287 bp)
Overview 1 RT 1: 539-5427 bp 2 RT 2: 17501-23603 bp Neighborhood of RT #1 [539, 5444] COG3415 T_den_put_tspse RVT_N RVT-GII GIIM HNHc PDDEXK_2 HTH_ARSR Neighborhood of RT #2 [17501, 23603] RVT-GII GIIM Peptidase_M78 Feature: gene Location: 539-1081 bp Feature: domain Description: COG3415 Location: 632-1043 bp Feature: domain Description: COG341 5 Location: 632-1 043 bp Feature: gene Location: 1278-1724 bp Feature: domain Description: T_den_put_tspse Location: 1314-1710 bp Feature: domain Description: T_den_put_tspse Location: 1 31 4-1 71 0 bp Feature: gene Location: 1765-3564 bp Feature: RT Description: RVT_N Location: 1813-2056 bp Feature: RT Description: RVT_N Location: 1 81 3-2056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2113-2755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 3-2755 bp Feature: domain Description: GIIM Note: maturase Location: 2815-3049 bp Feature: domain Description: GIIM Note: maturase Location: 281 5-3049 bp Feature: domain Description: HNHc Note: nucleases Location: 3247-3415 bp Feature: domain Description: HNHc Note: nucleases Location: 3247-341 5 bp Feature: gene Location: 4137-4475 bp Feature: domain Description: PDDEXK_2 Location: 4164-4224 bp Feature: domain Description: PDDEXK_2 Location: 41 64-4224 bp Feature: gene Location: 5139-5444 bp Feature: domain Description: HTH_ARSR Location: 5208-5427 bp Feature: domain Description: HTH_ARSR Location: 5208-5427 bp Feature: gene Location: 17501-18643 bp Feature: gene Location: 18737-19759 bp Feature: gene Location: 19862-21784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20141-21041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 41 -21 041 bp Feature: domain Description: GIIM Note: maturase Location: 21122-21341 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 22-21 341 bp Feature: gene Location: 22514-23329 bp Feature: domain Description: Peptidase_M78 Location: 23057-23282 bp Feature: domain Description: Peptidase_M78 Location: 23057-23282 bp Feature: gene Location: 23322-23603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T_den_put_tspse (TIGR01784), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PDDEXK_2 (pfam12784), HTH_ARSR (smart00418), COG3415 (Transposase ), Peptidase_M78 (pfam06114)