myRT

myRT report for GCA_002152065.1_ASM215206v1

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Seq: NGSC01000001.1 Escherichia coli strain MGH169 scaffold00001, whole genome shotgun sequence (4913896 bp)
Overview 1 RT 1: 1347661-1354468 bp 2 RT 2: 3284057-3289394 bp 3 RT 3: 3589355-3593115 bp 4 RT 4: 4790212-4794398 bp Neighborhood of RT #1 [1347661, 1354470] phage_tail_N PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #2 [3284057, 3289402] PFLE_PFLC RVT-GII RVT-GII GIIM YesM Neighborhood of RT #3 [3589355, 3593117] DUF1016_N PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #4 [4790212, 4794400] PRK09678 RVT-Retrons Arm-DNA-bind_3 PRK09692 Feature: gene Location: 1347661-1350984 bp Ori: OUF91725.1 Feature: domain Description: phage_tail_N Location: 1347664-1348063 bp Feature: domain Description: phage_tail_N Location: 1 347664-1 348063 bp Feature: gene Location: 1350987-1351358 bp Ori: OUF91726.1 Feature: domain Description: PHA02517 Location: 1350990-1351356 bp Feature: domain Description: PHA0251 7 Location: 1 350990-1 351 356 bp Feature: gene Location: 1351550-1353073 bp Ori: OUF91727.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1351823-1352555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 351 823-1 352555 bp Feature: domain Description: GIIM Note: maturase Location: 1352630-1352828 bp Feature: domain Description: GIIM Note: maturase Location: 1 352630-1 352828 bp Feature: gene Location: 1353665-1354144 bp Ori: OUF91728.1 Feature: domain Description: PHA02517 Location: 1353725-1354079 bp Feature: domain Description: PHA0251 7 Location: 1 353725-1 354079 bp Feature: gene Location: 1354144-1354470 bp Ori: OUF91729.1 Feature: domain Description: InsE Location: 1354147-1354468 bp Feature: domain Description: InsE Location: 1 3541 47-1 354468 bp Feature: gene Location: 3284057-3284974 bp Ori: OUF93493.1 Feature: domain Description: PFLE_PFLC Location: 3284093-3284948 bp Feature: domain Description: PFLE_PFLC Location: 3284093-3284948 bp Feature: gene Location: 3285111-3286016 bp Feature: gene Location: 3286502-3287041 bp Ori: OUF93495.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3286832-3286910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3286832-328691 0 bp Feature: gene Location: 3287108-3287590 bp Ori: OUF93496.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3287117-3287357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32871 1 7-3287357 bp Feature: domain Description: GIIM Note: maturase Location: 3287405-3287585 bp Feature: domain Description: GIIM Note: maturase Location: 3287405-3287585 bp Feature: gene Location: 3287912-3288100 bp Feature: gene Location: 3288140-3289402 bp Ori: OUF93498.1 Feature: domain Description: YesM Location: 3288653-3289394 bp Feature: domain Description: YesM Location: 3288653-3289394 bp Feature: gene Location: 3589355-3589594 bp Ori: OUF93790.1 Feature: domain Description: DUF1016_N Location: 3589412-3589589 bp Feature: domain Description: DUF1 01 6_N Location: 358941 2-3589589 bp Feature: gene Location: 3589634-3590005 bp Ori: OUF93791.1 Feature: domain Description: PHA02517 Location: 3589637-3590003 bp Feature: domain Description: PHA0251 7 Location: 3589637-3590003 bp Feature: gene Location: 3590197-3591720 bp Ori: OUF93792.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3590470-3591202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3590470-3591 202 bp Feature: domain Description: GIIM Note: maturase Location: 3591277-3591475 bp Feature: domain Description: GIIM Note: maturase Location: 3591 277-3591 475 bp Feature: gene Location: 3592312-3592791 bp Ori: OUF93793.1 Feature: domain Description: PHA02517 Location: 3592372-3592726 bp Feature: domain Description: PHA0251 7 Location: 3592372-3592726 bp Feature: gene Location: 3592791-3593117 bp Ori: OUF93794.1 Feature: domain Description: InsE Location: 3592794-3593115 bp Feature: domain Description: InsE Location: 3592794-35931 1 5 bp Feature: gene Location: 4790212-4790484 bp Ori: OUF94902.1 Feature: domain Description: PRK09678 Location: 4790221-4790377 bp Feature: domain Description: PRK09678 Location: 4790221 -4790377 bp Feature: gene Location: 4791112-4792098 bp Feature: gene Location: 4792100-4793032 bp Ori: OUF94904.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4792202-4792796 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4792202-4792796 bp Feature: gene Location: 4793487-4793789 bp Ori: OUF94905.1 Feature: domain Description: Arm-DNA-bind_3 Location: 4793496-4793748 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4793496-4793748 bp Feature: gene Location: 4793849-4794400 bp Ori: OUF94906.1 Feature: domain Description: PRK09692 Location: 4793855-4794398 bp Feature: domain Description: PRK09692 Location: 4793855-4794398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT phage_tail_N (pfam08400), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), PFLE_PFLC (TIGR02494), YesM (COG2972), DUF1016_N (pfam17761), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons
Arm-DNA-bind_3 (pfam13356), PRK09692 (Integrase; provisional)