myRT

myRT report for GCA_002152135.1_ASM215213v1

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Seq: NGSE01000001.1 Escherichia coli strain MGH179 scaffold00001, whole genome shotgun sequence (3334814 bp)
Overview 1 RT 1: 2979960-2985279 bp 2 RT 2: 3008583-3013272 bp 3 RT 3: 3174016-3179114 bp Neighborhood of RT #1 [2979960, 2985305] YesM RVT-GII GIIM RVT-GII PFLE_PFLC Neighborhood of RT #2 [3008583, 3013328] RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [3174016, 3179116] InsE PHA02517 RVT-GII GIIM fecE Feature: gene Location: 2979960-2981189 bp Ori: OUF99205.1 Feature: domain Description: YesM Location: 2980440-2981181 bp Feature: domain Description: YesM Location: 2980440-2981 1 81 bp Feature: gene Location: 2981262-2981450 bp Feature: gene Location: 2981772-2982254 bp Ori: OUF99207.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2981781-2982021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2981 781 -2982021 bp Feature: domain Description: GIIM Note: maturase Location: 2982069-2982249 bp Feature: domain Description: GIIM Note: maturase Location: 2982069-2982249 bp Feature: gene Location: 2982321-2982860 bp Ori: OUF99208.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2982651-2982729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2982651 -2982729 bp Feature: gene Location: 2983346-2984251 bp Feature: gene Location: 2984388-2985305 bp Ori: OUF99210.1 Feature: domain Description: PFLE_PFLC Location: 2984424-2985279 bp Feature: domain Description: PFLE_PFLC Location: 2984424-2985279 bp Feature: gene Location: 3008583-3008906 bp Feature: gene Location: 3008954-3009778 bp Feature: gene Location: 3010787-3012310 bp Ori: OUF99238.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3011060-3011792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301 1 060-301 1 792 bp Feature: domain Description: GIIM Note: maturase Location: 3011867-3012065 bp Feature: domain Description: GIIM Note: maturase Location: 301 1 867-301 2065 bp Feature: gene Location: 3012502-3012873 bp Ori: OUF99239.1 Feature: domain Description: PHA02517 Location: 3012505-3012871 bp Feature: domain Description: PHA0251 7 Location: 301 2505-301 2871 bp Feature: gene Location: 3012978-3013328 bp Ori: OUF99240.1 Feature: domain Description: InsE Location: 3012987-3013272 bp Feature: domain Description: InsE Location: 301 2987-301 3272 bp Feature: gene Location: 3174016-3174288 bp Ori: OUF99392.1 Feature: domain Description: InsE Location: 3174025-3174274 bp Feature: domain Description: InsE Location: 31 74025-31 74274 bp Feature: gene Location: 3174530-3174769 bp Ori: OUF99393.1 Feature: domain Description: PHA02517 Location: 3174533-3174704 bp Feature: domain Description: PHA0251 7 Location: 31 74533-31 74704 bp Feature: gene Location: 3175361-3176884 bp Ori: OUF99394.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3175634-3176366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 75634-31 76366 bp Feature: domain Description: GIIM Note: maturase Location: 3176441-3176639 bp Feature: domain Description: GIIM Note: maturase Location: 31 76441 -31 76639 bp Feature: gene Location: 3177535-3177792 bp Feature: gene Location: 3178349-3179116 bp Ori: OUF99396.1 Feature: domain Description: fecE Location: 3178352-3179114 bp Feature: domain Description: fecE Location: 31 78352-31 791 1 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), fecE (PRK11231)

Seq: NGSE01000002.1 Escherichia coli strain MGH179 scaffold00002, whole genome shotgun sequence (1777188 bp)
Overview 1 RT 1: 292498-298529 bp Neighborhood of RT #1 [292498, 298666] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 292498-292638 bp Ori: OUF89153.1 Feature: domain Description: SfsB Location: 292507-292579 bp Feature: domain Description: SfsB Location: 2 92 507-2 92 579 bp Feature: gene Location: 292635-293105 bp Feature: gene Location: 293452-296661 bp Ori: OUF89155.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 293980-294469 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 93980-2 94469 bp Feature: domain Description: nitrilase Location: 295975-296572 bp Feature: domain Description: nitrilase Location: 2 95975-2 96572 bp Feature: gene Location: 296977-297759 bp Ori: OUF89156.1 Feature: domain Description: AbiEi_3_N Location: 296989-297250 bp Feature: domain Description: AbiEi_3_N Location: 2 96989-2 972 50 bp Feature: domain Description: AbiEi_3 Location: 297262-297718 bp Feature: domain Description: AbiEi_3 Location: 2 972 62 -2 97718 bp Feature: gene Location: 297746-298666 bp Ori: OUF89157.1 Feature: domain Description: AbiEii Location: 297788-298529 bp Feature: domain Description: AbiEii Location: 2 97788-2 9852 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)