myRT

myRT report for GCA_002152405.1_ASM215240v1

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Seq: NGSU01000001.1 Klebsiella pneumoniae strain MGH133 scaffold00001, whole genome shotgun sequence (3864118 bp)
Overview 1 RT 1: 2424898-2428849 bp 2 RT 2: 3633072-3638007 bp Neighborhood of RT #1 [2424898, 2428849] RVT-GII Neighborhood of RT #2 [3633072, 3638009] umuC PRK10276 RVT-GII Q DDE_Tnp_IS1 Feature: gene Location: 2424898-2425650 bp Feature: gene Location: 2425661-2425834 bp Feature: gene Location: 2426272-2427759 bp Ori: OUG75526.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2426677-2427367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2426677-2427367 bp Feature: gene Location: 2427837-2427941 bp Feature: gene Location: 2427974-2428849 bp Feature: gene Location: 3633072-3634337 bp Ori: OUG76655.1 Feature: domain Description: umuC Location: 3633075-3634335 bp Feature: domain Description: umuC Location: 3633075-3634335 bp Feature: gene Location: 3634339-3634758 bp Ori: OUG76656.1 Feature: domain Description: PRK10276 Location: 3634342-3634753 bp Feature: domain Description: PRK1 0276 Location: 3634342-3634753 bp Feature: gene Location: 3634837-3636324 bp Ori: OUG76657.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3635242-3635932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3635242-3635932 bp Feature: gene Location: 3636819-3637217 bp Ori: OUG76658.1 Feature: domain Description: Q Location: 3636822-3637209 bp Feature: domain Description: Q Location: 3636822-3637209 bp Feature: gene Location: 3637632-3638009 bp Ori: OUG76659.1 Feature: domain Description: DDE_Tnp_IS1 Location: 3637635-3638007 bp Feature: domain Description: DDE_Tnp_IS1 Location: 3637635-3638007 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), Q (PHA02536), DDE_Tnp_IS1 (pfam03400)

Seq: NGSU01000004.1 Klebsiella pneumoniae strain MGH133 scaffold00004, whole genome shotgun sequence (239436 bp)
Overview 1 RT 1: 225502-230514 bp Neighborhood of RT #1 [225502, 230514] INT_Cre_C RVT-GII HHA Feature: gene Location: 225502-225819 bp Feature: gene Location: 225885-227021 bp Ori: OUG69570.1 Feature: domain Description: INT_Cre_C Location: 226308-226962 bp Feature: domain Description: INT_Cre_C Location: 2 2 6308-2 2 6962 bp Feature: gene Location: 227107-228594 bp Ori: OUG69571.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227512-228202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 7512 -2 2 82 02 bp Feature: gene Location: 229107-229361 bp Ori: OUG69572.1 Feature: domain Description: HHA Location: 229158-229341 bp Feature: domain Description: HHA Location: 2 2 9158-2 2 9341 bp Feature: gene Location: 229447-230514 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Cre_C (cd00799), RVT-GII, HHA (pfam05321)

Seq: NGSU01000002.1 Klebsiella pneumoniae strain MGH133 scaffold00002, whole genome shotgun sequence (1621492 bp)
Overview 1 RT 1: 33578-41072 bp Neighborhood of RT #1 [33578, 41089] PRK09692 RVT-UG4 FimD FimC Feature: gene Location: 33578-33657 bp Feature: gene Location: 33985-34848 bp Ori: OUG70628.1 Feature: domain Description: PRK09692 Location: 34009-34846 bp Feature: domain Description: PRK09692 Location: 3 4009-3 4846 bp Feature: gene Location: 35606-37687 bp Ori: OUG70629.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 36017-36461 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3 6017-3 6461 bp Feature: gene Location: 37684-40278 bp Ori: OUG70630.1 Feature: domain Description: FimD Location: 37726-40267 bp Feature: domain Description: FimD Location: 3 7726-40267 bp Feature: gene Location: 40325-41089 bp Ori: OUG70631.1 Feature: domain Description: FimC Location: 40370-41072 bp Feature: domain Description: FimC Location: 403 70-41072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG4, FimD (COG3188), FimC (COG3121)