myRT

myRT report for GCA_002152515.1_ASM215251v1

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Seq: NGTB01000002.1 Klebsiella pneumoniae strain MGH155 scaffold00002, whole genome shotgun sequence (228394 bp)
Overview 1 RT 1: 212437-217449 bp Neighborhood of RT #1 [212437, 217449] INT_Cre_C RVT-GII HHA Feature: gene Location: 212437-212754 bp Feature: gene Location: 212820-213956 bp Ori: OUH15296.1 Feature: domain Description: INT_Cre_C Location: 213243-213897 bp Feature: domain Description: INT_Cre_C Location: 21 3243-21 3897 bp Feature: gene Location: 214042-215526 bp Ori: OUH15297.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 214444-215134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 4444-21 51 34 bp Feature: gene Location: 216042-216296 bp Ori: OUH15298.1 Feature: domain Description: HHA Location: 216093-216276 bp Feature: domain Description: HHA Location: 21 6093-21 6276 bp Feature: gene Location: 216382-217449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Cre_C (cd00799), RVT-GII, HHA (pfam05321)

Seq: NGTB01000001.1 Klebsiella pneumoniae strain MGH155 scaffold00001, whole genome shotgun sequence (5515703 bp)
Overview 1 RT 1: 1351413-1356248 bp 2 RT 2: 1506761-1509541 bp 3 RT 3: 2746716-2750667 bp 4 RT 4: 4038504-4047101 bp Neighborhood of RT #1 [1351413, 1356250] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #2 [1506761, 1509933] DDE_Tnp_IS1 Q RVT-GII Neighborhood of RT #3 [2746716, 2750667] RVT-GII Neighborhood of RT #4 [4038504, 4047106] FimC FimD RVT-UG4 PRK09692 YqgA Feature: gene Location: 1351413-1351970 bp Ori: OUH18312.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1351494-1351917 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1351494-1351917 bp Feature: gene Location: 1352141-1352383 bp Ori: OUH18313.1 Feature: domain Description: DinI Location: 1352192-1352372 bp Feature: domain Description: DinI Location: 1352 192 -1352 372 bp Feature: gene Location: 1353000-1354484 bp Ori: OUH18314.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1353402-1354092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1353402 -1354092 bp Feature: gene Location: 1354563-1354982 bp Ori: OUH18315.1 Feature: domain Description: PRK10276 Location: 1354566-1354977 bp Feature: domain Description: PRK102 76 Location: 1354566-1354977 bp Feature: gene Location: 1354985-1356250 bp Ori: OUH18316.1 Feature: domain Description: umuC Location: 1354988-1356248 bp Feature: domain Description: umuC Location: 1354988-13562 48 bp Feature: gene Location: 1506761-1507138 bp Ori: OUH18454.1 Feature: domain Description: DDE_Tnp_IS1 Location: 1506764-1507136 bp Feature: domain Description: DDE_Tnp_IS1 Location: 1506764-1507136 bp Feature: gene Location: 1507553-1507951 bp Ori: OUH18455.1 Feature: domain Description: Q Location: 1507556-1507943 bp Feature: domain Description: Q Location: 1507556-1507943 bp Feature: gene Location: 1508449-1509933 bp Ori: OUH18456.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1508851-1509541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1508851-1509541 bp Feature: gene Location: 2746716-2747591 bp Feature: gene Location: 2747624-2747728 bp Feature: gene Location: 2747806-2749290 bp Ori: OUH19596.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2748208-2748898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7482 08-2 748898 bp Feature: gene Location: 2749731-2749904 bp Feature: gene Location: 2749915-2750667 bp Feature: gene Location: 4038504-4039268 bp Ori: OUH20770.1 Feature: domain Description: FimC Location: 4038549-4039251 bp Feature: domain Description: FimC Location: 4038549-40392 51 bp Feature: gene Location: 4039315-4041909 bp Ori: OUH20771.1 Feature: domain Description: FimD Location: 4039357-4041898 bp Feature: domain Description: FimD Location: 4039357-4041898 bp Feature: gene Location: 4041906-4043987 bp Ori: OUH20772.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4042317-4042761 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4042 317-4042 761 bp Feature: gene Location: 4044745-4045608 bp Ori: OUH20773.1 Feature: domain Description: PRK09692 Location: 4044769-4045606 bp Feature: domain Description: PRK09692 Location: 4044769-4045606 bp Feature: gene Location: 4046426-4047106 bp Ori: OUH20774.1 Feature: domain Description: YqgA Location: 4046429-4047101 bp Feature: domain Description: YqgA Location: 404642 9-4047101 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), DDE_Tnp_IS1 (pfam03400), Q (PHA02536), FimC (COG3121), FimD (COG3188), RVT-UG4
PRK09692 (Integrase; provisional), YqgA (COG1811)