myRT

myRT report for GCA_002152765.1_ASM215276v1

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Seq: NGTW01000003.1 Klebsiella pneumoniae strain UCI112 scaffold00003, whole genome shotgun sequence (48005 bp)
Overview 1 RT 1: 15744-20923 bp Neighborhood of RT #1 [15744, 20925] umuC PRK10276 RVT-GII PRK13699 Feature: gene Location: 15744-17015 bp Feature: domain Description: umuC Location: 15747-17007 bp Feature: domain Description: umuC Location: 1 5747-1 7007 bp Feature: gene Location: 17015-17440 bp Feature: domain Description: PRK10276 Location: 17018-17426 bp Feature: domain Description: PRK1 0276 Location: 1 701 8-1 7426 bp Feature: gene Location: 17838-19325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18243-18933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8243-1 8933 bp Feature: gene Location: 19557-19787 bp Feature: gene Location: 20224-20925 bp Feature: domain Description: PRK13699 Location: 20227-20923 bp Feature: domain Description: PRK1 3699 Location: 20227-20923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, PRK13699 (putative methylase; Provisional)

Seq: NGTW01000002.1 Klebsiella pneumoniae strain UCI112 scaffold00002, whole genome shotgun sequence (144852 bp)
Overview 1 RT 1: 1256-6599 bp 2 RT 2: 135208-141540 bp Neighborhood of RT #1 [1256, 6736] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Neighborhood of RT #2 [135208, 141725] InsE PHA02517 RVT-GII GIIM Phage_integrase Rep_3 Feature: gene Location: 1256-2527 bp Feature: domain Description: umuC Location: 1259-2522 bp Feature: domain Description: umuC Location: 12 59-2 52 2 bp Feature: gene Location: 2527-2952 bp Feature: domain Description: PRK10276 Location: 2530-2938 bp Feature: domain Description: PRK102 76 Location: 2 530-2 938 bp Feature: gene Location: 3355-4842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3760-4450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3760-4450 bp Feature: gene Location: 5091-6062 bp Feature: domain Description: StbA Location: 5094-6039 bp Feature: domain Description: StbA Location: 5094-6039 bp Feature: gene Location: 6065-6736 bp Feature: domain Description: Plasmid_stab_B Location: 6080-6287 bp Feature: domain Description: Plasmid_stab_B Location: 6080-62 87 bp Feature: domain Description: Plasmid_stab_B Location: 6392-6599 bp Feature: domain Description: Plasmid_stab_B Location: 6392 -6599 bp Feature: gene Location: 135208-135510 bp Feature: domain Description: InsE Location: 135217-135499 bp Feature: domain Description: InsE Location: 1352 17-135499 bp Feature: gene Location: 135723-135962 bp Feature: domain Description: PHA02517 Location: 135729-135897 bp Feature: domain Description: PHA02 517 Location: 13572 9-135897 bp Feature: gene Location: 136554-138077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136827-137559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13682 7-137559 bp Feature: domain Description: GIIM Note: maturase Location: 137634-137832 bp Feature: domain Description: GIIM Note: maturase Location: 137634-137832 bp Feature: gene Location: 139277-140017 bp Feature: domain Description: Phage_integrase Location: 139409-139925 bp Feature: domain Description: Phage_integrase Location: 139409-13992 5 bp Feature: gene Location: 140715-141725 bp Feature: domain Description: Rep_3 Location: 140787-141540 bp Feature: domain Description: Rep_3 Location: 140787-141540 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), Phage_integrase (pfam00589), Rep_3 (pfam01051)

Seq: NGTW01000001.1 Klebsiella pneumoniae strain UCI112 scaffold00001, whole genome shotgun sequence (5500940 bp)
Overview 1 RT 1: 1895585-1901002 bp 2 RT 2: 3266621-3270940 bp 3 RT 3: 3350203-3356685 bp 4 RT 4: 3858485-3862807 bp Neighborhood of RT #1 [1895585, 1901004] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #2 [3266621, 3270940] InsE RVT-GII PinE Neighborhood of RT #3 [3350203, 3356687] YccC PRK10016 RVT-GII dacD SbcB Neighborhood of RT #4 [3858485, 3862807] umuC PRK10276 RVT-GII Feature: gene Location: 1895585-1896724 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1895768-1896668 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1895768-1896668 bp Feature: gene Location: 1896895-1897137 bp Feature: domain Description: DinI Location: 1896946-1897126 bp Feature: domain Description: DinI Location: 1896946-1897126 bp Feature: gene Location: 1897751-1899238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1898156-1898846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1898156-1898846 bp Feature: gene Location: 1899317-1899736 bp Feature: domain Description: PRK10276 Location: 1899320-1899731 bp Feature: domain Description: PRK10276 Location: 18993 20-189973 1 bp Feature: gene Location: 1899739-1901004 bp Feature: domain Description: umuC Location: 1899742-1901002 bp Feature: domain Description: umuC Location: 1899742-1901002 bp Feature: gene Location: 3266621-3267025 bp Feature: domain Description: InsE Location: 3266651-3266990 bp Feature: domain Description: InsE Location: 3 266651-3 266990 bp Feature: gene Location: 3267267-3267506 bp Feature: gene Location: 3267584-3269071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3267989-3268679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 267989-3 268679 bp Feature: gene Location: 3270327-3270701 bp Feature: domain Description: PinE Location: 3270330-3270693 bp Feature: domain Description: PinE Location: 3 2703 3 0-3 270693 bp Feature: gene Location: 3270793-3270940 bp Feature: gene Location: 3350203-3351261 bp Feature: domain Description: YccC Location: 3350209-3351247 bp Feature: domain Description: YccC Location: 3 3 50209-3 3 51247 bp Feature: gene Location: 3351360-3351833 bp Feature: domain Description: PRK10016 Location: 3351363-3351822 bp Feature: domain Description: PRK10016 Location: 3 3 513 63 -3 3 51822 bp Feature: gene Location: 3351915-3353402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3352320-3353010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 523 20-3 3 53 010 bp Feature: gene Location: 3353919-3355082 bp Feature: domain Description: dacD Location: 3353922-3355077 bp Feature: domain Description: dacD Location: 3 3 53 922-3 3 55077 bp Feature: gene Location: 3355263-3356687 bp Feature: domain Description: SbcB Location: 3355269-3356685 bp Feature: domain Description: SbcB Location: 3 3 55269-3 3 56685 bp Feature: gene Location: 3858485-3859756 bp Feature: domain Description: umuC Location: 3858488-3859751 bp Feature: domain Description: umuC Location: 3 858488-3 859751 bp Feature: gene Location: 3859756-3860181 bp Feature: domain Description: PRK10276 Location: 3859759-3860167 bp Feature: domain Description: PRK10276 Location: 3 859759-3 860167 bp Feature: gene Location: 3860584-3862071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3860989-3861679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 860989-3 861679 bp Feature: gene Location: 3862168-3862506 bp Feature: gene Location: 3862499-3862807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), InsE (COG2963), PinE (COG1961), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397)
SbcB (COG2925)