myRT

myRT report for GCA_002152995.1_ASM215299v1

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Seq: NGRV01000001.1 Escherichia coli strain BIDMC115 scaffold00001, whole genome shotgun sequence (4550035 bp)
Overview 1 RT 1: 1677938-1683801 bp 2 RT 2: 3523414-3527296 bp Neighborhood of RT #1 [1677938, 1683815] PRK13381 DcuC RVT-GII Asparaginase_2 DUF5339 Neighborhood of RT #2 [3523414, 3527301] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 1677938-1679194 bp Feature: domain Description: PRK13381 Location: 1677944-1679159 bp Feature: domain Description: PRK1 3381 Location: 1 677944-1 6791 59 bp Feature: gene Location: 1679191-1680552 bp Feature: domain Description: DcuC Location: 1679194-1680526 bp Feature: domain Description: DcuC Location: 1 6791 94-1 680526 bp Feature: gene Location: 1681198-1681644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1681504-1681606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 681 504-1 681 606 bp Feature: gene Location: 1682168-1683199 bp Feature: domain Description: Asparaginase_2 Location: 1682258-1683191 bp Feature: domain Description: Asparaginase_2 Location: 1 682258-1 6831 91 bp Feature: gene Location: 1683537-1683815 bp Feature: domain Description: DUF5339 Location: 1683600-1683801 bp Feature: domain Description: DUF5339 Location: 1 683600-1 683801 bp Feature: gene Location: 3523414-3523872 bp Feature: domain Description: dut Location: 3523420-3523867 bp Feature: domain Description: dut Location: 3523420-3523867 bp Feature: gene Location: 3523979-3524575 bp Feature: domain Description: slmA Location: 3523985-3524561 bp Feature: domain Description: slmA Location: 3523985-3524561 bp Feature: gene Location: 3524621-3525580 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3524756-3525305 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3524756-3525305 bp Feature: gene Location: 3525878-3526519 bp Feature: domain Description: pyrE Location: 3525881-3526514 bp Feature: domain Description: pyrE Location: 3525881 -352651 4 bp Feature: gene Location: 3526585-3527301 bp Feature: domain Description: rph Location: 3526588-3527296 bp Feature: domain Description: rph Location: 3526588-3527296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13381 (peptidase T; Provisional), DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112), DUF5339 (pfam17274), dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)