myRT

myRT report for GCA_002153105.1_ASM215310v1

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Seq: NGSW01000001.1 Klebsiella pneumoniae strain MGH140 scaffold00001, whole genome shotgun sequence (5438622 bp)
Overview 1 RT 1: 585573-588980 bp 2 RT 2: 1026383-1031988 bp 3 RT 3: 1368879-1374297 bp 4 RT 4: 1549169-1555034 bp 5 RT 5: 2803913-2810396 bp 6 RT 6: 3256608-3260089 bp Neighborhood of RT #1 [585573, 589081] Laminin_G_3 RVT-GII PRK10276 PRK10276 Neighborhood of RT #2 [1026383, 1032014] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #3 [1368879, 1374299] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #4 [1549169, 1555036] Rve PinE RVT-GII PRK10276 umuC Neighborhood of RT #5 [2803913, 2810398] YccC PRK10016 RVT-GII dacD SbcB Neighborhood of RT #6 [3256608, 3260089] Terminase_2 RVT-GII Feature: gene Location: 585573-586304 bp Feature: domain Description: Laminin_G_3 Location: 585894-586248 bp Feature: domain Description: Laminin_G_3 Location: 585894-586248 bp Feature: gene Location: 586301-586510 bp Feature: gene Location: 586960-588447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 587365-588055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 587365-588055 bp Feature: gene Location: 588525-588764 bp Feature: gene Location: 588764-589081 bp Feature: domain Description: PRK10276 Location: 588770-588884 bp Feature: domain Description: PRK1 0276 Location: 588770-588884 bp Feature: domain Description: PRK10276 Location: 588911-588980 bp Feature: domain Description: PRK1 0276 Location: 58891 1 -588980 bp Feature: gene Location: 1026383-1026946 bp Feature: domain Description: YbjK Location: 1026389-1026926 bp Feature: domain Description: YbjK Location: 1 026389-1 026926 bp Feature: gene Location: 1027069-1028121 bp Feature: domain Description: int Location: 1027072-1028071 bp Feature: domain Description: int Location: 1 027072-1 028071 bp Feature: gene Location: 1028537-1030024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1028942-1029632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 028942-1 029632 bp Feature: gene Location: 1030123-1031067 bp Feature: gene Location: 1031079-1032014 bp Feature: domain Description: Phage_CI_repr Location: 1031163-1031346 bp Feature: domain Description: Phage_CI_repr Location: 1 031 1 63-1 031 346 bp Feature: domain Description: Phage_CI_repr Location: 1031475-1031667 bp Feature: domain Description: Phage_CI_repr Location: 1 031 475-1 031 667 bp Feature: domain Description: Phage_CI_C Location: 1031694-1031988 bp Feature: domain Description: Phage_CI_C Location: 1 031 694-1 031 988 bp Feature: gene Location: 1368879-1370018 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1369062-1369962 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1 369062-1 369962 bp Feature: gene Location: 1370189-1370431 bp Feature: domain Description: DinI Location: 1370240-1370420 bp Feature: domain Description: DinI Location: 1 370240-1 370420 bp Feature: gene Location: 1371046-1372533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1371451-1372141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 371 451 -1 3721 41 bp Feature: gene Location: 1372612-1373031 bp Feature: domain Description: PRK10276 Location: 1372615-1373026 bp Feature: domain Description: PRK1 0276 Location: 1 37261 5-1 373026 bp Feature: gene Location: 1373034-1374299 bp Feature: domain Description: umuC Location: 1373037-1374297 bp Feature: domain Description: umuC Location: 1 373037-1 374297 bp Feature: gene Location: 1549169-1549873 bp Feature: domain Description: Rve Location: 1549172-1549817 bp Feature: domain Description: Rve Location: 1 5491 72-1 54981 7 bp Feature: gene Location: 1549939-1550388 bp Feature: domain Description: PinE Location: 1549948-1550380 bp Feature: domain Description: PinE Location: 1 549948-1 550380 bp Feature: gene Location: 1551783-1553270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1552188-1552878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5521 88-1 552878 bp Feature: gene Location: 1553263-1553769 bp Feature: domain Description: PRK10276 Location: 1553353-1553764 bp Feature: domain Description: PRK1 0276 Location: 1 553353-1 553764 bp Feature: gene Location: 1553771-1555036 bp Feature: domain Description: umuC Location: 1553774-1555034 bp Feature: domain Description: umuC Location: 1 553774-1 555034 bp Feature: gene Location: 2803913-2804971 bp Feature: domain Description: YccC Location: 2803919-2804957 bp Feature: domain Description: YccC Location: 280391 9-2804957 bp Feature: gene Location: 2805070-2805543 bp Feature: domain Description: PRK10016 Location: 2805073-2805532 bp Feature: domain Description: PRK1 001 6 Location: 2805073-2805532 bp Feature: gene Location: 2805625-2807112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2806030-2806720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2806030-2806720 bp Feature: gene Location: 2807630-2808793 bp Feature: domain Description: dacD Location: 2807633-2808788 bp Feature: domain Description: dacD Location: 2807633-2808788 bp Feature: gene Location: 2808974-2810398 bp Feature: domain Description: SbcB Location: 2808980-2810396 bp Feature: domain Description: SbcB Location: 2808980-281 0396 bp Feature: gene Location: 3256608-3257192 bp Feature: domain Description: Terminase_2 Location: 3256653-3257118 bp Feature: domain Description: Terminase_2 Location: 3256653-32571 1 8 bp Feature: gene Location: 3257270-3257527 bp Feature: gene Location: 3257928-3259415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3258333-3259023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3258333-3259023 bp Feature: gene Location: 3259512-3259850 bp Feature: gene Location: 3259850-3260089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), umuC (PRK03609)
Rve (COG3316), PinE (COG1961), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925), Terminase_2 (pfam03592)