myRT

myRT report for GCA_002154165.1_ASM215416v1

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Seq: MTPK01000247.1 Shigella flexneri strain SP1 ctgs_ctg247_2272, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2272 bp Neighborhood of RT #1 [93, 2272] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1 098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 73-1 371 bp Feature: gene Location: 1570-1995 bp Feature: gene Location: 2030-2272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTPK01000138.1 Shigella flexneri strain SP1 ctgs_ctg138_9270, whole genome shotgun sequence (9270 bp)
Overview 1 RT 1: 793-2845 bp Neighborhood of RT #1 [793, 3042] RVT-GII PHA02517 PHA02517 Feature: gene Location: 793-1215 bp Feature: gene Location: 1606-1784 bp Feature: gene Location: 1878-2117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1884-2091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1884-2 091 bp Feature: gene Location: 2264-2506 bp Feature: domain Description: PHA02517 Location: 2300-2462 bp Feature: domain Description: PHA02 517 Location: 2 300-2 462 bp Feature: gene Location: 2479-3042 bp Feature: domain Description: PHA02517 Location: 2539-2845 bp Feature: domain Description: PHA02 517 Location: 2 539-2 845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: MTPK01000175.1 Shigella flexneri strain SP1 ctgs_ctg175_5764, whole genome shotgun sequence (5764 bp)
Overview 1 RT 1: 521-3252 bp Neighborhood of RT #1 [521, 3254] PAP2_acid_phosphatase Tra5 RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 521-1270 bp Feature: domain Description: PAP2_acid_phosphatase Location: 596-1250 bp Feature: domain Description: PAP2_acid_phosphatase Location: 596-1250 bp Feature: gene Location: 1633-1866 bp Feature: domain Description: Tra5 Location: 1657-1849 bp Feature: domain Description: Tra5 Location: 1657-1849 bp Feature: gene Location: 1879-2682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2179-2674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2179-2674 bp Feature: gene Location: 2735-3061 bp Feature: domain Description: GIIM Note: maturase Location: 2768-2987 bp Feature: domain Description: GIIM Note: maturase Location: 2768-2987 bp Feature: gene Location: 3165-3254 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3177-3252 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3 177-3 252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), PAP2_acid_phosphatase (cd03397)

Seq: MTPK01000169.1 Shigella flexneri strain SP1 ctgs_ctg169_5959, whole genome shotgun sequence (5959 bp)
Overview 1 RT 1: 3203-5827 bp Neighborhood of RT #1 [3203, 5844] COG3547 DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3203-3685 bp Feature: domain Description: COG3547 Location: 3221-3674 bp Feature: domain Description: COG354 7 Location: 3221-3674 bp Feature: gene Location: 3715-3906 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3772-3883 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3772-3883 bp Feature: gene Location: 3977-5155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4124-4778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 124 -4 778 bp Feature: domain Description: GIIM Note: maturase Location: 4856-5078 bp Feature: domain Description: GIIM Note: maturase Location: 4 856-5078 bp Feature: gene Location: 5205-5623 bp Feature: gene Location: 5680-5844 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5683-5827 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5683-5827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)