myRT

myRT report for GCA_002154605.1_ASM215460v1

Download annotations/find similar RTs

Seq: MUNE01000154.1 Streptomyces milbemycinicus strain NRRL 5739 NRRL_5739_contig_154, whole genome shotgun sequence (5786 bp)
Overview 1 RT 1: 109-3523 bp Neighborhood of RT #1 [109, 3537] RVT-GII Intron_maturas2 HNHc DUF4232 Feature: gene Location: 109-1890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370-1165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370-1 1 65 bp Feature: domain Description: Intron_maturas2 Location: 1282-1495 bp Feature: domain Description: Intron_maturas2 Location: 1 282-1 495 bp Feature: domain Description: HNHc Note: nucleases Location: 1687-1846 bp Feature: domain Description: HNHc Note: nucleases Location: 1 687-1 846 bp Feature: gene Location: 2349-2678 bp Feature: gene Location: 2863-3537 bp Feature: domain Description: DUF4232 Location: 3142-3523 bp Feature: domain Description: DUF4232 Location: 31 42-3523 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4232 (pfam14016)

Seq: MUNE01000179.1 Streptomyces milbemycinicus strain NRRL 5739 NRRL_5739_contig_179, whole genome shotgun sequence (25103 bp)
Overview 1 RT 1: 112-5773 bp Neighborhood of RT #1 [112, 5773] HTH_ARSR LpqC RVT-GII GIIM Feature: gene Location: 112-1194 bp Feature: domain Description: HTH_ARSR Location: 952-1165 bp Feature: domain Description: HTH_ARSR Location: 952 -1165 bp Feature: gene Location: 1269-2153 bp Feature: domain Description: LpqC Location: 1374-1791 bp Feature: domain Description: LpqC Location: 1374-1791 bp Feature: gene Location: 3003-4352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3324-4014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332 4-4014 bp Feature: domain Description: GIIM Note: maturase Location: 4083-4290 bp Feature: domain Description: GIIM Note: maturase Location: 4083-42 90 bp Feature: gene Location: 4867-5331 bp Feature: gene Location: 5603-5773 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), LpqC (COG3509), RVT-GII, GIIM (pfam08388)

Seq: MUNE01000289.1 Streptomyces milbemycinicus strain NRRL 5739 NRRL_5739_contig_289, whole genome shotgun sequence (22063 bp)
Overview 1 RT 1: 8848-14328 bp Neighborhood of RT #1 [8848, 14372] GIIM DDE_Tnp_ISAZ013 RVT-GII GIIM HTH_Tnp_4 BaeS Feature: gene Location: 8848-9531 bp Feature: domain Description: GIIM Note: maturase Location: 8863-9052 bp Feature: domain Description: GIIM Note: maturase Location: 8863 -9052 bp Feature: gene Location: 9666-10256 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 9675-10224 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 9675-10224 bp Feature: gene Location: 10822-12252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11143-11827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11143 -11827 bp Feature: domain Description: GIIM Note: maturase Location: 11902-12130 bp Feature: domain Description: GIIM Note: maturase Location: 11902-1213 0 bp Feature: gene Location: 12299-12814 bp Feature: domain Description: HTH_Tnp_4 Location: 12560-12704 bp Feature: domain Description: HTH_Tnp_4 Location: 12560-12704 bp Feature: gene Location: 12999-14372 bp Feature: domain Description: BaeS Location: 13356-14328 bp Feature: domain Description: BaeS Location: 13 3 56-143 28 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_Tnp_4 (pfam13613), BaeS (COG0642), DDE_Tnp_ISAZ013 (pfam07592)

Seq: MUNE01000700.1 Streptomyces milbemycinicus strain NRRL 5739 NRRL_5739_contig_700, whole genome shotgun sequence (8951 bp)
Overview 1 RT 1: 2-6014 bp Neighborhood of RT #1 [2, 6094] Ggt RVT_N RVT-GII GIIM HNH Acetyltransf_1 F420_MSMEG_4879 Feature: gene Location: 2-1378 bp Feature: domain Description: Ggt Location: 23-1364 bp Feature: domain Description: Ggt Location: 23-1364 bp Feature: gene Location: 2529-4328 bp Feature: RT Description: RVT_N Location: 2607-2850 bp Feature: RT Description: RVT_N Location: 2607-2850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2901-3561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2901-3561 bp Feature: domain Description: GIIM Note: maturase Location: 3615-3849 bp Feature: domain Description: GIIM Note: maturase Location: 3615-384 9 bp Feature: domain Description: HNH Note: nucleases Location: 4176-4275 bp Feature: domain Description: HNH Note: nucleases Location: 4 176-4 275 bp Feature: gene Location: 4525-5013 bp Feature: domain Description: Acetyltransf_1 Location: 4615-4930 bp Feature: domain Description: Acetyltransf_1 Location: 4 615-4 930 bp Feature: gene Location: 5087-6094 bp Feature: domain Description: F420_MSMEG_4879 Location: 5222-6014 bp Feature: domain Description: F4 20_MSMEG_4 879 Location: 5222-6014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ggt (COG0405), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), Acetyltransf_1 (pfam00583), F420_MSMEG_4879 (TIGR03564)