myRT

myRT report for GCA_002154695.1_ASM215469v1

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Seq: MTAV01000078.1 Nostoc sp. T09 NODE_120_length_130817_cov_107.913055, whole genome shotgun sequence (130877 bp)
Overview 1 RT 1: 79165-87782 bp Neighborhood of RT #1 [79165, 87784] SnoaL tmk RVT_N RVT-GII GIIM HNH AA_permease_2 BaeS PLN02286 Feature: gene Location: 79165-79821 bp Feature: domain Description: SnoaL Location: 79444-79786 bp Feature: domain Description: SnoaL Location: 79444-79786 bp Feature: gene Location: 80014-80598 bp Feature: domain Description: tmk Location: 80026-80578 bp Feature: domain Description: tmk Location: 80026-80578 bp Feature: gene Location: 80714-82417 bp Feature: RT Description: RVT_N Location: 80750-80993 bp Feature: RT Description: RVT_N Location: 80750-80993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81038-81734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 038-81 734 bp Feature: domain Description: GIIM Note: maturase Location: 81818-82046 bp Feature: domain Description: GIIM Note: maturase Location: 81 81 8-82046 bp Feature: domain Description: HNH Note: nucleases Location: 82268-82403 bp Feature: domain Description: HNH Note: nucleases Location: 82268-82403 bp Feature: gene Location: 83174-85942 bp Feature: domain Description: AA_permease_2 Location: 83300-84389 bp Feature: domain Description: AA_permease_2 Location: 83300-84389 bp Feature: domain Description: BaeS Location: 84848-85940 bp Feature: domain Description: BaeS Location: 84848-85940 bp Feature: gene Location: 86018-87784 bp Feature: domain Description: PLN02286 Location: 86039-87782 bp Feature: domain Description: PLN02286 Location: 86039-87782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SnoaL (pfam07366), tmk (PRK00698), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), AA_permease_2 (pfam13520), BaeS (COG0642), PLN02286 (arginine-tRNA ligase)

Seq: MTAV01000047.1 Nostoc sp. T09 NODE_71_length_95656_cov_104.650772, whole genome shotgun sequence (95716 bp)
Overview 1 RT 1: 29842-38860 bp Neighborhood of RT #1 [29842, 38865] secA RVT_N RVT-GII GIIM HNHc DHC MoxR Feature: gene Location: 29842-30342 bp Feature: gene Location: 31107-33899 bp Feature: domain Description: secA Location: 31110-33882 bp Feature: domain Description: secA Location: 31110-33882 bp Feature: gene Location: 34171-35871 bp Feature: RT Description: RVT_N Location: 34219-34459 bp Feature: RT Description: RVT_N Location: 342 19-34459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34513-35152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34513-35152 bp Feature: domain Description: GIIM Note: maturase Location: 35224-35458 bp Feature: domain Description: GIIM Note: maturase Location: 352 2 4-35458 bp Feature: domain Description: HNHc Note: nucleases Location: 35662-35821 bp Feature: domain Description: HNHc Note: nucleases Location: 35662 -3582 1 bp Feature: gene Location: 36707-37264 bp Feature: domain Description: DHC Location: 36920-37229 bp Feature: domain Description: DHC Location: 3692 0-372 2 9 bp Feature: gene Location: 37957-38865 bp Feature: domain Description: MoxR Location: 37963-38860 bp Feature: domain Description: MoxR Location: 37963-38860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT secA (TIGR00963), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DHC (pfam09626), MoxR (COG0714)

Seq: MTAV01000120.1 Nostoc sp. T09 NODE_190_length_52072_cov_108.192772, whole genome shotgun sequence (52132 bp)
Overview 1 RT 1: 457-2823 bp Neighborhood of RT #1 [457, 2873] RVT_N RVT-GII McrA SnoaL Ycf54 Feature: gene Location: 457-2031 bp Feature: RT Description: RVT_N Location: 493-733 bp Feature: RT Description: RVT_N Location: 493 -73 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 790-1447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 790-1447 bp Feature: domain Description: McrA Location: 1684-2008 bp Feature: domain Description: McrA Location: 1684-2008 bp Feature: gene Location: 2109-2480 bp Feature: domain Description: SnoaL Location: 2160-2373 bp Feature: domain Description: SnoaL Location: 2160-23 73 bp Feature: gene Location: 2544-2873 bp Feature: domain Description: Ycf54 Location: 2550-2823 bp Feature: domain Description: Ycf54 Location: 2550-2823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SnoaL (pfam07366), Ycf54 (pfam10674), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: MTAV01000055.1 Nostoc sp. T09 NODE_85_length_87246_cov_106.470222, whole genome shotgun sequence (87306 bp)
Overview 1 RT 1: 41621-49388 bp Neighborhood of RT #1 [41621, 49459] TPR_12 TPR_12 TPR TPR_12 TPR_12 TPR_12 TPR_12 CHAT RVT_N RVT-GII GIIM HNHc CheB CAP_ED HTH_Crp_2 Feature: gene Location: 41621-42124 bp Feature: gene Location: 42154-45141 bp Feature: domain Description: TPR_12 Location: 42298-42490 bp Feature: domain Description: TPR_12 Location: 4 2298-4 24 90 bp Feature: domain Description: TPR_12 Location: 42535-42682 bp Feature: domain Description: TPR_12 Location: 4 2535-4 2682 bp Feature: domain Description: TPR Location: 42772-42865 bp Feature: domain Description: TPR Location: 4 2772-4 2865 bp Feature: domain Description: TPR_12 Location: 42892-43105 bp Feature: domain Description: TPR_12 Location: 4 2892-4 3105 bp Feature: domain Description: TPR_12 Location: 43135-43345 bp Feature: domain Description: TPR_12 Location: 4 3135-4 334 5 bp Feature: domain Description: TPR_12 Location: 43372-43582 bp Feature: domain Description: TPR_12 Location: 4 3372-4 3582 bp Feature: domain Description: TPR_12 Location: 43621-43822 bp Feature: domain Description: TPR_12 Location: 4 3621-4 3822 bp Feature: domain Description: CHAT Location: 44299-45133 bp Feature: domain Description: CHAT Location: 4 4 299-4 5133 bp Feature: gene Location: 45363-47057 bp Feature: RT Description: RVT_N Location: 45411-45654 bp Feature: RT Description: RVT_N Location: 4 54 11-4 5654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45705-46338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 5705-4 6338 bp Feature: domain Description: GIIM Note: maturase Location: 46413-46647 bp Feature: domain Description: GIIM Note: maturase Location: 4 64 13-4 664 7 bp Feature: domain Description: HNHc Note: nucleases Location: 46857-47010 bp Feature: domain Description: HNHc Note: nucleases Location: 4 6857-4 7010 bp Feature: gene Location: 47886-48521 bp Feature: domain Description: CheB Location: 47958-48495 bp Feature: domain Description: CheB Location: 4 7958-4 84 95 bp Feature: gene Location: 48746-49459 bp Feature: domain Description: CAP_ED Location: 48776-49079 bp Feature: domain Description: CAP_ED Location: 4 8776-4 9079 bp Feature: domain Description: HTH_Crp_2 Location: 49190-49388 bp Feature: domain Description: HTH_Crp_2 Location: 4 9190-4 9388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_12 (pfam13424), TPR (smart00028), CHAT (pfam12770), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), CheB (COG2201), CAP_ED (cl00047), HTH_Crp_2 (pfam13545)

Seq: MTAV01000048.1 Nostoc sp. T09 NODE_72_length_24703_cov_112.533417, whole genome shotgun sequence (24763 bp)
Overview 1 RT 1: 16894-23107 bp Neighborhood of RT #1 [16894, 23115] COG3393 SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 RVT-Retrons PRK13236 Feature: gene Location: 16894-17760 bp Feature: domain Description: COG3393 Location: 17428-17728 bp Feature: domain Description: COG3393 Location: 17428-17728 bp Feature: gene Location: 17782-19308 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 17803-17953 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 17803-1795 3 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 18202-18310 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 18202-18310 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 18622-19261 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 18622-19261 bp Feature: gene Location: 20165-21220 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20345-20960 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20345 -20960 bp Feature: gene Location: 22222-23115 bp Feature: domain Description: PRK13236 Location: 22231-23107 bp Feature: domain Description: PRK13236 Location: 22231-23107 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3393 (Predicted acetyltransferase, GNAT family ), SPFH_eoslipins_u2 (cd13438), RVT-Retrons, PRK13236 (nitrogenase reductase; Reviewed)

Seq: MTAV01000248.1 Nostoc sp. T09 NODE_550_length_24939_cov_102.139900, whole genome shotgun sequence (24999 bp)
Overview 1 RT 1: 140-3742 bp Neighborhood of RT #1 [140, 3742] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 140-1789 bp Feature: RT Description: RVT_N Location: 191-434 bp Feature: RT Description: RVT_N Location: 191-434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 476-1091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 476 -1091 bp Feature: domain Description: GIIM Note: maturase Location: 1151-1376 bp Feature: domain Description: GIIM Note: maturase Location: 1151-1376 bp Feature: domain Description: HNHc Note: nucleases Location: 1598-1760 bp Feature: domain Description: HNHc Note: nucleases Location: 1598-176 0 bp Feature: gene Location: 2489-2848 bp Feature: gene Location: 2939-3742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: MTAV01000204.1 Nostoc sp. T09 NODE_358_length_8814_cov_114.071022, whole genome shotgun sequence (8874 bp)
Overview 1 RT 1: 4210-8501 bp Neighborhood of RT #1 [4210, 8563] SpoVK Y1_Tnp RVT_N RVT-GII GIIM HNHc Feature: gene Location: 4210-6204 bp Feature: domain Description: SpoVK Location: 5422-6094 bp Feature: domain Description: SpoVK Location: 5422-6094 bp Feature: gene Location: 6333-6629 bp Feature: domain Description: Y1_Tnp Location: 6396-6552 bp Feature: domain Description: Y1_Tnp Location: 6396-6552 bp Feature: gene Location: 6833-8563 bp Feature: RT Description: RVT_N Location: 6878-7124 bp Feature: RT Description: RVT_N Location: 687 8-7 124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7166-7862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 166-7 862 bp Feature: domain Description: GIIM Note: maturase Location: 7940-8165 bp Feature: domain Description: GIIM Note: maturase Location: 7 940-8165 bp Feature: domain Description: HNHc Note: nucleases Location: 8357-8501 bp Feature: domain Description: HNHc Note: nucleases Location: 8357 -8501 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpoVK (COG0464), Y1_Tnp (pfam01797), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)