myRT

myRT report for GCA_002154725.1_ASM215472v1

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Seq: MTAW01000102.1 Nostoc sp. 106C 163_28108_29.1201_365_28108_0.408033300128077, whole genome shotgun sequence (28108 bp)
Overview 1 RT 1: 6020-12067 bp Neighborhood of RT #1 [6020, 12081] clpC RVT-Retrons PemK_toxin Feature: gene Location: 6020-8488 bp Feature: domain Description: clpC Location: 6023-8441 bp Feature: domain Description: clpC Location: 6023-8441 bp Feature: gene Location: 8739-9611 bp Feature: gene Location: 9611-10705 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9785-10391 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9785-1 0391 bp Feature: gene Location: 11511-11729 bp Feature: gene Location: 11719-12081 bp Feature: domain Description: PemK_toxin Location: 11746-12067 bp Feature: domain Description: PemK_toxin Location: 1 1 746-1 2067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PemK_toxin (pfam02452), clpC, RVT-Retrons

Seq: MTAW01000024.1 Nostoc sp. 106C 4636_1665_29.4615_15651_1665_0.452852852852853, whole genome shotgun sequence (1665 bp)
Overview 1 RT 1: 38-1610 bp Neighborhood of RT #1 [38, 1610] RVT_N RVT-GII CheR Feature: gene Location: 38-607 bp Feature: RT Description: RVT_N Location: 74-320 bp Feature: RT Description: RVT_N Location: 74-32 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362-593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362 -593 bp Feature: gene Location: 1198-1398 bp Feature: domain Description: CheR Location: 1201-1396 bp Feature: domain Description: CheR Location: 12 01-1396 bp Feature: gene Location: 1423-1610 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CheR (pfam01739), RVT_N (pfam13655), RVT-GII

Seq: MTAW01000121.1 Nostoc sp. 106C 18_118164_27.0674_49_118164_0.396288209606987, whole genome shotgun sequence (118164 bp)
Overview 1 RT 1: 70600-83549 bp Neighborhood of RT #1 [70600, 84613] Peptidase_C14 Peptidase_C14 pfam13191 7WD40 7WD40 KOG0291 7WD40 PD40 RVT_N RVT-GII GIIM HNHc AmyAc_5 HEAT_2 HEAT_2 HEAT_PBS HEAT_2 Feature: gene Location: 70600-72615 bp Feature: domain Description: Peptidase_C14 Location: 70618-71431 bp Feature: domain Description: Peptidase_C14 Location: 70618-7143 1 bp Feature: gene Location: 72831-77381 bp Feature: domain Description: Peptidase_C14 Location: 72855-73458 bp Feature: domain Description: Peptidase_C14 Location: 72855-73 458 bp Feature: domain Description: pfam13191 Location: 73752-74154 bp Feature: domain Description: pfam13 191 Location: 73 752-74154 bp Feature: domain Description: 7WD40 Location: 75441-75663 bp Feature: domain Description: 7WD40 Location: 75441-75663 bp Feature: domain Description: 7WD40 Location: 75765-76482 bp Feature: domain Description: 7WD40 Location: 75765-76482 bp Feature: domain Description: KOG0291 Location: 76515-76773 bp Feature: domain Description: KOG0291 Location: 76515-76773 bp Feature: domain Description: 7WD40 Location: 76794-77151 bp Feature: domain Description: 7WD40 Location: 76794-77151 bp Feature: domain Description: PD40 Location: 77190-77232 bp Feature: domain Description: PD40 Location: 77190-7723 2 bp Feature: gene Location: 77769-79466 bp Feature: RT Description: RVT_N Location: 77817-78060 bp Feature: RT Description: RVT_N Location: 77817-78060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78111-78747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78111-78747 bp Feature: domain Description: GIIM Note: maturase Location: 78822-79056 bp Feature: domain Description: GIIM Note: maturase Location: 78822-79056 bp Feature: domain Description: HNHc Note: nucleases Location: 79266-79419 bp Feature: domain Description: HNHc Note: nucleases Location: 79266-79419 bp Feature: gene Location: 80199-82085 bp Feature: domain Description: AmyAc_5 Location: 80304-81711 bp Feature: domain Description: AmyAc_5 Location: 803 04-81711 bp Feature: gene Location: 82268-84613 bp Feature: domain Description: HEAT_2 Location: 82412-82736 bp Feature: domain Description: HEAT_2 Location: 82412-8273 6 bp Feature: domain Description: HEAT_2 Location: 82829-83069 bp Feature: domain Description: HEAT_2 Location: 82829-83 069 bp Feature: domain Description: HEAT_PBS Location: 83087-83180 bp Feature: domain Description: HEAT_PBS Location: 83 087-83 180 bp Feature: domain Description: HEAT_2 Location: 83285-83549 bp Feature: domain Description: HEAT_2 Location: 83 285-83 549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_C14 (pfam00656), pfam13191 (AAA_16;AAA ATPase domain), 7WD40 (sd00039), KOG0291 (KOG0291, WD40-repeat-containing subunit of the 18S rRNA processing complex ), PD40 (pfam07676), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), AmyAc_5 (cd11352)
HEAT_2 (pfam13646), HEAT_PBS (pfam03130)

Seq: MTAW01000061.1 Nostoc sp. 106C 119_36228_25.8797_281_36228_0.421607596334327, whole genome shotgun sequence (36228 bp)
Overview 1 RT 1: 34256-36177 bp Neighborhood of RT #1 [34256, 36191] RVT_N RVT-GII Feature: gene Location: 34256-34777 bp Feature: gene Location: 34805-34918 bp Feature: gene Location: 35649-36191 bp Feature: RT Description: RVT_N Location: 35658-35904 bp Feature: RT Description: RVT_N Location: 35658-35904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35946-36177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3594 6-36177 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: MTAW01000175.1 Nostoc sp. 106C 2492_2448_84.1417_8875_2448_0.418300653594771, whole genome shotgun sequence (2448 bp)
Overview 1 RT 1: 116-1856 bp Neighborhood of RT #1 [116, 1900] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 116-1900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377-1172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377-1172 bp Feature: domain Description: Intron_maturas2 Location: 1274-1502 bp Feature: domain Description: Intron_maturas2 Location: 1274-15 02 bp Feature: domain Description: HNHc Note: nucleases Location: 1697-1856 bp Feature: domain Description: HNHc Note: nucleases Location: 1697-185 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)