myRT

myRT report for GCA_002155205.1_ASM215520v1

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Seq: MUBP01000104.1 Escherichia coli strain SJRP/Ec42694 Cotig_111, whole genome shotgun sequence (7519 bp)
Overview 1 RT 1: 4604-7465 bp Neighborhood of RT #1 [4604, 7465] DcuC RVT-GII RVT-GII Feature: gene Location: 4604-5965 bp Ori: OUK78575.1 Feature: domain Description: DcuC Location: 4607-5939 bp Feature: domain Description: DcuC Location: 4607-5939 bp Feature: gene Location: 6180-6386 bp Feature: gene Location: 6611-7057 bp Ori: OUK78576.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6917-7019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 691 7-701 9 bp Feature: gene Location: 7009-7173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7012-7168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 701 2-71 68 bp Feature: gene Location: 7221-7465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII

Seq: MUBP01000082.1 Escherichia coli strain SJRP/Ec42694 Cotig_180, whole genome shotgun sequence (13459 bp)
Overview 1 RT 1: 8115-11669 bp Neighborhood of RT #1 [8115, 11680] RVT-GII RVT-GII GIIM PHA02517 PHA02517 Feature: gene Location: 8115-8366 bp Feature: gene Location: 8401-8903 bp Feature: gene Location: 9127-9660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9130-9586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9130-9586 bp Feature: gene Location: 9608-10504 bp Ori: OUK82519.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9665-9986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9665-9986 bp Feature: domain Description: GIIM Note: maturase Location: 10061-10280 bp Feature: domain Description: GIIM Note: maturase Location: 10061-102 80 bp Feature: gene Location: 10579-11046 bp Ori: OUK82520.1 Feature: domain Description: PHA02517 Location: 10588-11038 bp Feature: domain Description: PHA02 517 Location: 10588-11038 bp Feature: gene Location: 11165-11680 bp Ori: OUK82521.1 Feature: domain Description: PHA02517 Location: 11207-11669 bp Feature: domain Description: PHA02 517 Location: 112 07-11669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: MUBP01000023.1 Escherichia coli strain SJRP/Ec42694 Cotig_53, whole genome shotgun sequence (70155 bp)
Overview 1 RT 1: 9768-13650 bp Neighborhood of RT #1 [9768, 13655] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9768-10226 bp Ori: OUK85601.1 Feature: domain Description: dut Location: 9774-10221 bp Feature: domain Description: dut Location: 9774-10221 bp Feature: gene Location: 10333-10929 bp Ori: OUK85602.1 Feature: domain Description: slmA Location: 10339-10915 bp Feature: domain Description: slmA Location: 103 3 9-10915 bp Feature: gene Location: 10975-11934 bp Ori: OUK85603.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11110-11659 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11110-11659 bp Feature: gene Location: 12232-12873 bp Ori: OUK85604.1 Feature: domain Description: pyrE Location: 12235-12868 bp Feature: domain Description: pyrE Location: 1223 5-12868 bp Feature: gene Location: 12939-13655 bp Ori: OUK85605.1 Feature: domain Description: rph Location: 12942-13650 bp Feature: domain Description: rph Location: 12942-13 650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: MUBP01000075.1 Escherichia coli strain SJRP/Ec42694 Cotig_15, whole genome shotgun sequence (16834 bp)
Overview 1 RT 1: 12050-16812 bp Neighborhood of RT #1 [12050, 16812] RVT-GII Inovirus_Gp2 Feature: gene Location: 12050-12313 bp Feature: gene Location: 12389-12508 bp Feature: gene Location: 13002-14336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13614-13974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13614 -13974 bp Feature: gene Location: 14662-15225 bp Ori: OUK82879.1 Feature: domain Description: Inovirus_Gp2 Location: 14719-15163 bp Feature: domain Description: Inovirus_Gp2 Location: 14 719-15163 bp Feature: gene Location: 16435-16812 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Inovirus_Gp2 (pfam11726)