myRT

myRT report for GCA_002155315.1_ASM215531v1

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Seq: MUJC01000030.1 Escherichia coli strain AUH_IMP186 NODE_30_length_52718_cov_26.35_ID_6330, whole genome shotgun sequence (52718 bp)
Overview 1 RT 1: 45241-52708 bp Neighborhood of RT #1 [45241, 52716] prfC PRK10597 RVT-Retrons TIR_2 Peptidase_S74 APC_N_CC Feature: gene Location: 45241-46827 bp Feature: domain Description: prfC Location: 45259-46825 bp Feature: domain Description: prfC Location: 45259-46825 bp Feature: gene Location: 47047-47307 bp Feature: domain Description: PRK10597 Location: 47050-47290 bp Feature: domain Description: PRK1 0597 Location: 47050-47290 bp Feature: gene Location: 47665-49269 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47956-48547 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47956-48547 bp Feature: domain Description: TIR_2 Location: 48874-49207 bp Feature: domain Description: TIR_2 Location: 48874-49207 bp Feature: gene Location: 49599-49772 bp Feature: gene Location: 49897-52716 bp Feature: domain Description: Peptidase_S74 Location: 52285-52432 bp Feature: domain Description: Peptidase_S74 Location: 52285-52432 bp Feature: domain Description: APC_N_CC Location: 52585-52708 bp Feature: domain Description: APC_N_CC Location: 52585-52708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Peptidase_S74 (pfam13884), APC_N_CC (pfam16689)

Seq: MUJC01000067.1 Escherichia coli strain AUH_IMP186 NODE_67_length_3580_cov_61.6455_ID_6404, whole genome shotgun sequence (3580 bp)
Overview 1 RT 1: 55-3536 bp Neighborhood of RT #1 [55, 3538] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 55-381 bp Feature: domain Description: InsE Location: 58-379 bp Feature: domain Description: InsE Location: 58-379 bp Feature: gene Location: 381-860 bp Feature: domain Description: PHA02517 Location: 441-795 bp Feature: domain Description: PHA02 517 Location: 441-795 bp Feature: gene Location: 1452-2975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1725-2457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172 5-2 457 bp Feature: domain Description: GIIM Note: maturase Location: 2532-2730 bp Feature: domain Description: GIIM Note: maturase Location: 2 532 -2 730 bp Feature: gene Location: 3152-3538 bp Feature: domain Description: PHA02517 Location: 3155-3536 bp Feature: domain Description: PHA02 517 Location: 3155-3536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: MUJC01000009.1 Escherichia coli strain AUH_IMP186 NODE_9_length_183250_cov_32.394_ID_6288, whole genome shotgun sequence (183250 bp)
Overview 1 RT 1: 138342-142633 bp Neighborhood of RT #1 [138342, 142633] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 138342-139604 bp Feature: domain Description: YesM Location: 138855-139596 bp Feature: domain Description: YesM Location: 13 8855-13 9596 bp Feature: gene Location: 139634-139804 bp Feature: gene Location: 140154-140675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140160-140442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140160-140442 bp Feature: domain Description: GIIM Note: maturase Location: 140490-140670 bp Feature: domain Description: GIIM Note: maturase Location: 140490-140670 bp Feature: gene Location: 140703-141242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141033-141111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14103 3 -141111 bp Feature: gene Location: 141273-141470 bp Feature: gene Location: 141728-142633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)