myRT

myRT report for GCA_002155325.1_ASM215532v1

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Seq: MUJB01000035.1 Escherichia coli strain AUH_IMP168 NODE_35_length_29654_cov_125.044_ID_3973, whole genome shotgun sequence (29654 bp)
Overview 1 RT 1: 10333-14707 bp Neighborhood of RT #1 [10333, 14712] Tra5 RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 10333-11154 bp Feature: domain Description: Tra5 Location: 10489-11017 bp Feature: domain Description: Tra5 Location: 1 0489-1 1 01 7 bp Feature: gene Location: 11530-11727 bp Feature: gene Location: 11896-12330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12088-12304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2088-1 2304 bp Feature: gene Location: 12303-13154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12306-12714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2306-1 271 4 bp Feature: domain Description: GIIM Note: maturase Location: 12762-12984 bp Feature: domain Description: GIIM Note: maturase Location: 1 2762-1 2984 bp Feature: gene Location: 13332-13550 bp Feature: gene Location: 13681-14712 bp Feature: domain Description: LacI Location: 13723-13858 bp Feature: domain Description: LacI Location: 1 3723-1 3858 bp Feature: domain Description: PBP1_GntR Location: 13897-14707 bp Feature: domain Description: PBP1 _GntR Location: 1 3897-1 4707 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)

Seq: MUJB01000040.1 Escherichia coli strain AUH_IMP168 NODE_40_length_20157_cov_114.419_ID_3983, whole genome shotgun sequence (20157 bp)
Overview 1 RT 1: 12167-15082 bp Neighborhood of RT #1 [12167, 15147] RVT-GII GIIM PHA02517 Feature: gene Location: 12167-12310 bp Feature: gene Location: 12335-12520 bp Feature: gene Location: 12607-14130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12880-13612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 880-13612 bp Feature: domain Description: GIIM Note: maturase Location: 13687-13885 bp Feature: domain Description: GIIM Note: maturase Location: 13687-13885 bp Feature: gene Location: 14084-14509 bp Feature: gene Location: 14722-15147 bp Feature: domain Description: PHA02517 Location: 14746-15082 bp Feature: domain Description: PHA02 517 Location: 14746-15082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: MUJB01000007.1 Escherichia coli strain AUH_IMP168 NODE_7_length_280795_cov_41.6775_ID_3917, whole genome shotgun sequence (280795 bp)
Overview 1 RT 1: 175226-179660 bp Neighborhood of RT #1 [175226, 179665] dut slmA RVT-Retrons RVT-Retrons pyrE rph Feature: gene Location: 175226-175684 bp Feature: domain Description: dut Location: 175232-175679 bp Feature: domain Description: dut Location: 17523 2-175679 bp Feature: gene Location: 175791-176387 bp Feature: domain Description: slmA Location: 175797-176373 bp Feature: domain Description: slmA Location: 175797-1763 73 bp Feature: gene Location: 176433-176906 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 176436-176631 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17643 6-17663 1 bp Feature: gene Location: 176985-177944 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 177120-177669 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 177120-177669 bp Feature: gene Location: 178242-178898 bp Feature: domain Description: pyrE Location: 178260-178893 bp Feature: domain Description: pyrE Location: 178260-178893 bp Feature: gene Location: 178949-179665 bp Feature: domain Description: rph Location: 178952-179660 bp Feature: domain Description: rph Location: 178952-179660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)