myRT

myRT report for GCA_002155375.1_ASM215537v1

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Seq: MUKD01000017.1 Escherichia coli strain AUH_IMP187 NODE_17_length_98783_cov_49.6874_ID_9781, whole genome shotgun sequence (98783 bp)
Overview 1 RT 1: 3157-6559 bp Neighborhood of RT #1 [3157, 6585] PHA02517 RVT-GII PHA02517 SH3 Feature: gene Location: 3157-3285 bp Feature: gene Location: 3333-3614 bp Feature: domain Description: PHA02517 Location: 3339-3549 bp Feature: domain Description: PHA0251 7 Location: 3339-3549 bp Feature: gene Location: 4206-5498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4479-5211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4479-521 1 bp Feature: gene Location: 5905-6291 bp Feature: domain Description: PHA02517 Location: 5908-6289 bp Feature: domain Description: PHA0251 7 Location: 5908-6289 bp Feature: gene Location: 6391-6585 bp Feature: domain Description: SH3 Location: 6442-6559 bp Feature: domain Description: SH3 Location: 6442-6559 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, SH3 (smart00326)

Seq: MUKD01000036.1 Escherichia coli strain AUH_IMP187 NODE_36_length_35680_cov_105.868_ID_9819, whole genome shotgun sequence (35680 bp)
Overview 1 RT 1: 1570-7179 bp Neighborhood of RT #1 [1570, 7229] RVT-GII Intron_maturas2 DDE_Tnp_Tn3 PRK13756 Feature: gene Location: 1570-1776 bp Feature: gene Location: 2110-2319 bp Feature: gene Location: 2454-4061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2721-3552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 72 1-3552 bp Feature: domain Description: Intron_maturas2 Location: 3666-3915 bp Feature: domain Description: Intron_maturas2 Location: 3666-3915 bp Feature: gene Location: 4647-6236 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5010-6168 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5010-6168 bp Feature: gene Location: 6552-7229 bp Feature: domain Description: PRK13756 Location: 6582-7179 bp Feature: domain Description: PRK13756 Location: 6582 -7179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), DDE_Tnp_Tn3 (pfam01526), PRK13756 (TetR family transcriptional regulator)

Seq: MUKD01000005.1 Escherichia coli strain AUH_IMP187 NODE_5_length_220525_cov_42.2495_ID_9757, whole genome shotgun sequence (220525 bp)
Overview 1 RT 1: 193135-195547 bp Neighborhood of RT #1 [193135, 195621] PHA02517 InsE RVT-GII RVT-GII group_II_RT_mat IS285 Feature: gene Location: 193135-193836 bp Feature: domain Description: PHA02517 Location: 193153-193831 bp Feature: domain Description: PHA02517 Location: 193 153 -193 83 1 bp Feature: gene Location: 193977-194279 bp Feature: domain Description: InsE Location: 193980-194265 bp Feature: domain Description: InsE Location: 193 980-194265 bp Feature: gene Location: 194318-194521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194363-194519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1943 63 -194519 bp Feature: gene Location: 194555-194791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194558-194738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194558-19473 8 bp Feature: gene Location: 194784-194996 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 194787-194985 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 194787-194985 bp Feature: gene Location: 195139-195621 bp Feature: domain Description: IS285 Location: 195169-195547 bp Feature: domain Description: IS285 Location: 195169-195547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)

Seq: MUKD01000060.1 Escherichia coli strain AUH_IMP187 NODE_60_length_12595_cov_49.1355_ID_9867, whole genome shotgun sequence (12595 bp)
Overview 1 RT 1: 96-6748 bp Neighborhood of RT #1 [96, 7464] YeeP RVT-UG1 GerD HEPN_Apea Feature: gene Location: 96-257 bp Feature: gene Location: 459-1331 bp Feature: domain Description: YeeP Location: 462-1329 bp Feature: domain Description: YeeP Location: 4 62-1329 bp Feature: gene Location: 1935-5624 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 2547-3057 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 254 7-3057 bp Feature: gene Location: 5633-6067 bp Feature: domain Description: GerD Location: 5711-5825 bp Feature: domain Description: GerD Location: 5711-5825 bp Feature: gene Location: 6364-7464 bp Feature: domain Description: HEPN_Apea Location: 6433-6748 bp Feature: domain Description: HEPN_Apea Location: 64 33-674 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT-UG1, GerD (pfam17898), HEPN_Apea (pfam18739)