myRT

myRT report for GCA_002155455.1_ASM215545v1

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Seq: MUKF01000033.1 Escherichia coli strain AUH_IMP200 NODE_33_length_32733_cov_60.2208_ID_3797, whole genome shotgun sequence (32733 bp)
Overview 1 RT 1: 17860-22758 bp Neighborhood of RT #1 [17860, 22758] PRK13704 RVT-GII Intron_maturas2 HNHc PRK10276 Feature: gene Location: 17860-18456 bp Feature: gene Location: 18453-19685 bp Feature: domain Description: PRK13704 Location: 19332-19677 bp Feature: domain Description: PRK1 3704 Location: 1 9332-1 9677 bp Feature: gene Location: 19877-21778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20144-20975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 44-20975 bp Feature: domain Description: Intron_maturas2 Location: 21089-21347 bp Feature: domain Description: Intron_maturas2 Location: 21 089-21 347 bp Feature: domain Description: HNHc Note: nucleases Location: 21521-21683 bp Feature: domain Description: HNHc Note: nucleases Location: 21 521 -21 683 bp Feature: gene Location: 22136-22555 bp Feature: domain Description: PRK10276 Location: 22175-22541 bp Feature: domain Description: PRK1 0276 Location: 221 75-22541 bp Feature: gene Location: 22591-22758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13704 (plasmid SOS inhibition protein A; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: MUKF01000007.1 Escherichia coli strain AUH_IMP200 NODE_7_length_196646_cov_51.4882_ID_3745, whole genome shotgun sequence (196646 bp)
Overview 1 RT 1: 181640-185923 bp Neighborhood of RT #1 [181640, 185931] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 181640-182545 bp Feature: gene Location: 182683-182874 bp Feature: gene Location: 183031-183570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183361-183439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183361-183439 bp Feature: gene Location: 183598-184119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183604-183886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183604-183886 bp Feature: domain Description: GIIM Note: maturase Location: 183934-184114 bp Feature: domain Description: GIIM Note: maturase Location: 183934-184114 bp Feature: gene Location: 184441-184629 bp Feature: gene Location: 184669-185931 bp Feature: domain Description: YesM Location: 185182-185923 bp Feature: domain Description: YesM Location: 185182 -18592 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: MUKF01000008.1 Escherichia coli strain AUH_IMP200 NODE_8_length_184923_cov_44.5426_ID_3747, whole genome shotgun sequence (184923 bp)
Overview 1 RT 1: 181782-184695 bp Neighborhood of RT #1 [181782, 184922] SLATT_5 RVT-UG17 Peptidase_S74 Feature: gene Location: 181782-181922 bp Feature: gene Location: 181935-182486 bp Feature: domain Description: SLATT_5 Location: 181941-182457 bp Feature: domain Description: SLATT_5 Location: 181941-182457 bp Feature: gene Location: 182464-183834 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 182692-183298 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 182692-183 298 bp Feature: gene Location: 183915-184247 bp Feature: gene Location: 184272-184922 bp Feature: domain Description: Peptidase_S74 Location: 184548-184695 bp Feature: domain Description: Peptidase_S74 Location: 184548-184695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Peptidase_S74 (pfam13884)

Seq: MUKF01000009.1 Escherichia coli strain AUH_IMP200 NODE_9_length_184315_cov_50.1643_ID_3749, whole genome shotgun sequence (184315 bp)
Overview 1 RT 1: 130969-134852 bp Neighborhood of RT #1 [130969, 134857] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 130969-131685 bp Feature: domain Description: rph Location: 130972-131680 bp Feature: domain Description: rph Location: 130972-131680 bp Feature: gene Location: 131737-132393 bp Feature: domain Description: pyrE Location: 131755-132388 bp Feature: domain Description: pyrE Location: 131755-132388 bp Feature: gene Location: 132691-133650 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132826-133375 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132826-133375 bp Feature: gene Location: 133696-134292 bp Feature: domain Description: slmA Location: 133702-134278 bp Feature: domain Description: slmA Location: 133702-134 278 bp Feature: gene Location: 134399-134857 bp Feature: domain Description: dut Location: 134405-134852 bp Feature: domain Description: dut Location: 134 4 05-134 852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)