myRT

myRT report for GCA_002155515.1_ASM215551v1

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Seq: MUKH01000011.1 Escherichia coli strain AUH_IMP314 NODE_11_length_198307_cov_57.686_ID_6191, whole genome shotgun sequence (198307 bp)
Overview 1 RT 1: 187998-193335 bp Neighborhood of RT #1 [187998, 193343] PFLE_PFLC RVT-GII RVT-GII GIIM YesM Feature: gene Location: 187998-188915 bp Feature: domain Description: PFLE_PFLC Location: 188034-188889 bp Feature: domain Description: PFLE_PFLC Location: 1 88034-1 88889 bp Feature: gene Location: 189052-189957 bp Feature: gene Location: 190443-190982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190773-190851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 90773-1 90851 bp Feature: gene Location: 191010-191531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 191016-191298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 01 6-1 91 298 bp Feature: domain Description: GIIM Note: maturase Location: 191346-191526 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 346-1 91 526 bp Feature: gene Location: 191853-192041 bp Feature: gene Location: 192081-193343 bp Feature: domain Description: YesM Location: 192594-193335 bp Feature: domain Description: YesM Location: 1 92594-1 93335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: MUKH01000018.1 Escherichia coli strain AUH_IMP314 NODE_18_length_102668_cov_53.8005_ID_6205, whole genome shotgun sequence (102668 bp)
Overview 1 RT 1: 15444-18984 bp Neighborhood of RT #1 [15444, 18986] COG4584 COG4584 IstB_IS21_ATP IstB_IS21 RVT-GII GIIM DDE_Tnp_IS66_C Dps Feature: gene Location: 15444-16505 bp Feature: domain Description: COG4584 Location: 15450-15843 bp Feature: domain Description: COG4584 Location: 15450-15843 bp Feature: domain Description: COG4584 Location: 15957-16371 bp Feature: domain Description: COG4584 Location: 15957-16371 bp Feature: gene Location: 16522-17277 bp Feature: domain Description: IstB_IS21_ATP Location: 16594-16678 bp Feature: domain Description: IstB_IS2 1_ATP Location: 16594-16678 bp Feature: domain Description: IstB_IS21 Location: 16687-17212 bp Feature: domain Description: IstB_IS2 1 Location: 16687-172 12 bp Feature: gene Location: 17419-18468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17437-18091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17437-18091 bp Feature: domain Description: GIIM Note: maturase Location: 18169-18394 bp Feature: domain Description: GIIM Note: maturase Location: 18169-18394 bp Feature: gene Location: 18584-18730 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 18596-18707 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 18596-18707 bp Feature: gene Location: 18822-18986 bp Feature: domain Description: Dps Location: 18825-18984 bp Feature: domain Description: Dps Location: 1882 5-18984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), Dps (COG0783)

Seq: MUKH01000004.1 Escherichia coli strain AUH_IMP314 NODE_4_length_327917_cov_50.5009_ID_6177, whole genome shotgun sequence (327917 bp)
Overview 1 RT 1: 2628-9450 bp Neighborhood of RT #1 [2628, 9587] RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 2628-2915 bp Feature: gene Location: 3556-4026 bp Feature: gene Location: 4373-7582 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4901-5390 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4901-53 90 bp Feature: domain Description: nitrilase Location: 6896-7493 bp Feature: domain Description: nitrilase Location: 6896-7493 bp Feature: gene Location: 7877-8680 bp Feature: domain Description: AbiEi_3_N Location: 7910-8171 bp Feature: domain Description: AbiEi_3 _N Location: 7910-8171 bp Feature: domain Description: AbiEi_3 Location: 8183-8639 bp Feature: domain Description: AbiEi_3 Location: 8183 -863 9 bp Feature: gene Location: 8667-9587 bp Feature: domain Description: AbiEii Location: 8709-9450 bp Feature: domain Description: AbiEii Location: 8709-9450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: MUKH01000065.1 Escherichia coli strain AUH_IMP314 NODE_65_length_2272_cov_106.326_ID_6299, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)