myRT

myRT report for GCA_002155535.1_ASM215553v1

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Seq: MUKI01000034.1 Escherichia coli strain AUH_IMP319 NODE_34_length_33053_cov_34.3103_ID_3628, whole genome shotgun sequence (33053 bp)
Overview 1 RT 1: 18180-23078 bp Neighborhood of RT #1 [18180, 23078] PRK13704 RVT-GII Intron_maturas2 HNHc PRK10276 Feature: gene Location: 18180-18776 bp Feature: gene Location: 18773-20005 bp Feature: domain Description: PRK13704 Location: 19652-19997 bp Feature: domain Description: PRK1 3704 Location: 1 9652-1 9997 bp Feature: gene Location: 20197-22098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20464-21295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20464-21 295 bp Feature: domain Description: Intron_maturas2 Location: 21409-21667 bp Feature: domain Description: Intron_maturas2 Location: 21 409-21 667 bp Feature: domain Description: HNHc Note: nucleases Location: 21841-22003 bp Feature: domain Description: HNHc Note: nucleases Location: 21 841 -22003 bp Feature: gene Location: 22456-22875 bp Feature: domain Description: PRK10276 Location: 22495-22861 bp Feature: domain Description: PRK1 0276 Location: 22495-22861 bp Feature: gene Location: 22911-23078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13704 (plasmid SOS inhibition protein A; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: MUKI01000004.1 Escherichia coli strain AUH_IMP319 NODE_4_length_258915_cov_41.5875_ID_3568, whole genome shotgun sequence (258915 bp)
Overview 1 RT 1: 255774-258687 bp Neighborhood of RT #1 [255774, 258914] SLATT_5 RVT-UG17 Peptidase_S74 Feature: gene Location: 255774-255914 bp Feature: gene Location: 255927-256478 bp Feature: domain Description: SLATT_5 Location: 255933-256449 bp Feature: domain Description: SLATT_5 Location: 2 55933-2 56449 bp Feature: gene Location: 256456-257826 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 256684-257290 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2 56684-2 572 90 bp Feature: gene Location: 257907-258239 bp Feature: gene Location: 258264-258914 bp Feature: domain Description: Peptidase_S74 Location: 258540-258687 bp Feature: domain Description: Peptidase_S74 Location: 2 58540-2 58687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Peptidase_S74 (pfam13884)

Seq: MUKI01000007.1 Escherichia coli strain AUH_IMP319 NODE_7_length_196645_cov_43.9906_ID_3574, whole genome shotgun sequence (196645 bp)
Overview 1 RT 1: 181639-185922 bp Neighborhood of RT #1 [181639, 185930] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 181639-182544 bp Feature: gene Location: 182682-182873 bp Feature: gene Location: 183030-183569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183360-183438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183 3 60-183 43 8 bp Feature: gene Location: 183597-184118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183603-183885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183 603 -183 885 bp Feature: domain Description: GIIM Note: maturase Location: 183933-184113 bp Feature: domain Description: GIIM Note: maturase Location: 183 93 3 -184113 bp Feature: gene Location: 184440-184628 bp Feature: gene Location: 184668-185930 bp Feature: domain Description: YesM Location: 185181-185922 bp Feature: domain Description: YesM Location: 185181-185922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: MUKI01000008.1 Escherichia coli strain AUH_IMP319 NODE_8_length_184315_cov_43.5293_ID_3576, whole genome shotgun sequence (184315 bp)
Overview 1 RT 1: 130969-134852 bp Neighborhood of RT #1 [130969, 134857] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 130969-131685 bp Feature: domain Description: rph Location: 130972-131680 bp Feature: domain Description: rph Location: 130972-131680 bp Feature: gene Location: 131737-132393 bp Feature: domain Description: pyrE Location: 131755-132388 bp Feature: domain Description: pyrE Location: 131755-132388 bp Feature: gene Location: 132691-133650 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132826-133375 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132826-133375 bp Feature: gene Location: 133696-134292 bp Feature: domain Description: slmA Location: 133702-134278 bp Feature: domain Description: slmA Location: 133702-134 278 bp Feature: gene Location: 134399-134857 bp Feature: domain Description: dut Location: 134405-134852 bp Feature: domain Description: dut Location: 134 4 05-134 852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)