myRT

myRT report for GCA_002155585.1_ASM215558v1

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Seq: MUKK01000021.1 Escherichia coli strain AUH_IMP396 NODE_21_length_77360_cov_18.5828_ID_4964, whole genome shotgun sequence (77360 bp)
Overview 1 RT 1: 926-4396 bp Neighborhood of RT #1 [926, 4503] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 926-1228 bp Feature: domain Description: Arm-DNA-bind_3 Location: 935-1187 bp Feature: domain Description: Arm-DNA-bind_3 Location: 935-1 1 87 bp Feature: gene Location: 1412-1657 bp Feature: gene Location: 1683-2615 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1785-2379 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 785-2379 bp Feature: gene Location: 2617-3603 bp Feature: gene Location: 4231-4503 bp Feature: domain Description: PRK09678 Location: 4240-4396 bp Feature: domain Description: PRK09678 Location: 4240-4396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional), Arm-DNA-bind_3 (pfam13356)

Seq: MUKK01000037.1 Escherichia coli strain AUH_IMP396 NODE_37_length_38818_cov_19.4604_ID_4996, whole genome shotgun sequence (38818 bp)
Overview 1 RT 1: 8283-11894 bp Neighborhood of RT #1 [8283, 11894] InsE PHA02517 RVT-GII RVT-GII GIIM PHA02517 Feature: gene Location: 8283-8609 bp Feature: domain Description: InsE Location: 8286-8607 bp Feature: domain Description: InsE Location: 82 86-8607 bp Feature: gene Location: 8609-9088 bp Feature: domain Description: PHA02517 Location: 8669-9023 bp Feature: domain Description: PHA02 517 Location: 8669-902 3 bp Feature: gene Location: 9680-10075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9953-10028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9953-1002 8 bp Feature: gene Location: 10117-11157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10123-10639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1012 3-10639 bp Feature: domain Description: GIIM Note: maturase Location: 10714-10912 bp Feature: domain Description: GIIM Note: maturase Location: 10714-10912 bp Feature: gene Location: 11280-11696 bp Feature: domain Description: PHA02517 Location: 11283-11688 bp Feature: domain Description: PHA02 517 Location: 112 83-11688 bp Feature: gene Location: 11724-11894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: MUKK01000052.1 Escherichia coli strain AUH_IMP396 NODE_52_length_4226_cov_482.986_ID_5026, whole genome shotgun sequence (4226 bp)
Overview 1 RT 1: 873-3128 bp Neighborhood of RT #1 [873, 3128] RVT-Retrons CspC Feature: gene Location: 873-1028 bp Feature: gene Location: 1118-1300 bp Feature: gene Location: 1322-2461 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1466-2021 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1466-2021 bp Feature: gene Location: 2466-2669 bp Feature: domain Description: CspC Location: 2469-2664 bp Feature: domain Description: CspC Location: 2469-2664 bp Feature: gene Location: 2928-3128 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, CspC (COG1278)