myRT

myRT report for GCA_002155825.1_ASM215582v1

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Seq: NEDM01000128.1 Escherichia coli strain AUH_IMP202 NODE_128_length_2923_cov_3.83512, whole genome shotgun sequence (2923 bp)
Overview 1 RT 1: 3-2922 bp Neighborhood of RT #1 [3, 2921] AAA_15 RVT-Retrons Feature: gene Location: 3-2288 bp Feature: domain Description: AAA_15 Location: 45-1053 bp Feature: domain Description: AAA_1 5 Location: 45-1 053 bp Feature: gene Location: 2403-2921 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2586-2922 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2586-2922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, AAA_15 (pfam13175)

Seq: NEDM01000135.1 Escherichia coli strain AUH_IMP202 NODE_135_length_2663_cov_45.3423, whole genome shotgun sequence (2663 bp)
Overview 1 RT 1: 149-1955 bp Neighborhood of RT #1 [149, 2050] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 149-2050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416-1247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416-12 47 bp Feature: domain Description: Intron_maturas2 Location: 1361-1619 bp Feature: domain Description: Intron_maturas2 Location: 1361-1619 bp Feature: domain Description: HNHc Note: nucleases Location: 1793-1955 bp Feature: domain Description: HNHc Note: nucleases Location: 1793-1955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NEDM01000136.1 Escherichia coli strain AUH_IMP202 NODE_136_length_2524_cov_24.1932, whole genome shotgun sequence (2524 bp)
Overview 1 RT 1: 1-2062 bp Neighborhood of RT #1 [1, 2307] PHA02517 RVT-GII GIIM Feature: gene Location: 1-192 bp Feature: domain Description: PHA02517 Location: 4-127 bp Feature: domain Description: PHA02517 Location: 4-127 bp Feature: gene Location: 784-2307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: domain Description: GIIM Note: maturase Location: 1864-2062 bp Feature: domain Description: GIIM Note: maturase Location: 1864-2062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NEDM01000052.1 Escherichia coli strain AUH_IMP202 NODE_52_length_27552_cov_9.58578, whole genome shotgun sequence (27552 bp)
Overview 1 RT 1: 927-4397 bp Neighborhood of RT #1 [927, 4504] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 927-1229 bp Feature: domain Description: Arm-DNA-bind_3 Location: 936-1188 bp Feature: domain Description: Arm-DNA-bind_3 Location: 936-1188 bp Feature: gene Location: 1413-1658 bp Feature: gene Location: 1684-2616 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1786-2380 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1786-2380 bp Feature: gene Location: 2618-3604 bp Feature: gene Location: 4232-4504 bp Feature: domain Description: PRK09678 Location: 4241-4397 bp Feature: domain Description: PRK09678 Location: 4 24 1-4 397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional), Arm-DNA-bind_3 (pfam13356)