myRT

myRT report for GCA_002155845.1_ASM215584v1

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Seq: NCTG01000029.1 Escherichia coli strain MEH_META NODE_29_length_65522_cov_45.0462_ID_5737, whole genome shotgun sequence (65522 bp)
Overview 1 RT 1: 7841-11259 bp 2 RT 2: 36918-41201 bp Neighborhood of RT #1 [7841, 11324] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [36918, 41209] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 7841-8191 bp Feature: domain Description: InsE Location: 7850-8135 bp Feature: domain Description: InsE Location: 7850-81 35 bp Feature: gene Location: 8296-8742 bp Feature: domain Description: PHA02517 Location: 8299-8740 bp Feature: domain Description: PHA0251 7 Location: 8299-8740 bp Feature: gene Location: 8859-10382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9132-9864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 32-9864 bp Feature: domain Description: GIIM Note: maturase Location: 9939-10137 bp Feature: domain Description: GIIM Note: maturase Location: 9939-1 01 37 bp Feature: gene Location: 10336-10761 bp Feature: gene Location: 10974-11324 bp Feature: domain Description: PHA02517 Location: 10980-11259 bp Feature: domain Description: PHA0251 7 Location: 1 0980-1 1 259 bp Feature: gene Location: 36918-37823 bp Feature: gene Location: 37961-38152 bp Feature: gene Location: 38309-38848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38639-38717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38639-3871 7 bp Feature: gene Location: 38876-39397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38882-39164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38882-391 64 bp Feature: domain Description: GIIM Note: maturase Location: 39212-39392 bp Feature: domain Description: GIIM Note: maturase Location: 3921 2-39392 bp Feature: gene Location: 39719-39907 bp Feature: gene Location: 39947-41209 bp Feature: domain Description: YesM Location: 40460-41201 bp Feature: domain Description: YesM Location: 40460-41 201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: NCTG01000030.1 Escherichia coli strain MEH_META NODE_30_length_63478_cov_135.526_ID_5739, whole genome shotgun sequence (63478 bp)
Overview 1 RT 1: 29833-34559 bp Neighborhood of RT #1 [29833, 34657] RVT_N RVT-GII GIIM HNHc AdoMet_MTases Feature: gene Location: 29833-30402 bp Feature: gene Location: 30927-31490 bp Feature: gene Location: 32064-33731 bp Feature: domain Description: RVT_N Location: 32112-32349 bp Feature: domain Description: RVT_N Location: 32 112 -32 349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32400-33042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 400-33042 bp Feature: domain Description: GIIM Note: maturase Location: 33093-33327 bp Feature: domain Description: GIIM Note: maturase Location: 33093-3332 7 bp Feature: domain Description: HNHc Note: nucleases Location: 33537-33696 bp Feature: domain Description: HNHc Note: nucleases Location: 33537-33696 bp Feature: gene Location: 33709-34008 bp Feature: gene Location: 34094-34657 bp Feature: domain Description: AdoMet_MTases Location: 34256-34559 bp Feature: domain Description: AdoMet_MTases Location: 342 56-34559 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), AdoMet_MTases (cl17173)

Seq: NCTG01000004.1 Escherichia coli strain MEH_META NODE_4_length_253569_cov_40.3916_ID_5687, whole genome shotgun sequence (253569 bp)
Overview 1 RT 1: 218324-224355 bp Neighborhood of RT #1 [218324, 224355] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 218324-219244 bp Feature: domain Description: AbiEii Location: 218366-219107 bp Feature: domain Description: AbiEii Location: 2183 66-219107 bp Feature: gene Location: 219231-220034 bp Feature: domain Description: AbiEi_3_N Location: 219264-219525 bp Feature: domain Description: AbiEi_3 _N Location: 219264-219525 bp Feature: domain Description: AbiEi_3 Location: 219537-219993 bp Feature: domain Description: AbiEi_3 Location: 21953 7-219993 bp Feature: gene Location: 220329-223538 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 220857-221346 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 220857-2213 46 bp Feature: domain Description: nitrilase Location: 222852-223449 bp Feature: domain Description: nitrilase Location: 222852-223 449 bp Feature: gene Location: 223699-223839 bp Feature: domain Description: Phage_ASH Location: 223726-223819 bp Feature: domain Description: Phage_ASH Location: 223 726-223 819 bp Feature: gene Location: 223885-224355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: NCTG01000006.1 Escherichia coli strain MEH_META NODE_6_length_247814_cov_38.8429_ID_5691, whole genome shotgun sequence (247814 bp)
Overview 1 RT 1: 244164-247490 bp Neighborhood of RT #1 [244164, 247490] HTH_XRE RVT-Retrons FRG Feature: gene Location: 244164-244556 bp Feature: gene Location: 244593-244913 bp Feature: domain Description: HTH_XRE Location: 244608-244767 bp Feature: domain Description: HTH_XRE Location: 24 4 608-24 4 767 bp Feature: gene Location: 244879-245829 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 245059-245602 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24 5059-24 5602 bp Feature: gene Location: 245938-247302 bp Feature: domain Description: FRG Location: 246505-246790 bp Feature: domain Description: FRG Location: 24 6505-24 6790 bp Feature: gene Location: 247341-247490 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, FRG (smart00901)