myRT

myRT report for GCA_002156235.1_ASM215623v1

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Seq: MWLY01000035.1 Salmonella enterica subsp. enterica serovar Bristol strain NCTC 9853 NODE_35_length_9569_cov_3.42057_ID_7382, whole genome shotgun sequence (9569 bp)
Overview 1 RT 1: 1020-5448 bp Neighborhood of RT #1 [1020, 5513] Rep_3 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1020-2030 bp Feature: domain Description: Rep_3 Location: 1092-1845 bp Feature: domain Description: Rep_3 Location: 1 092-1 845 bp Feature: gene Location: 2356-2802 bp Feature: domain Description: PHA02517 Location: 2359-2800 bp Feature: domain Description: PHA0251 7 Location: 2359-2800 bp Feature: gene Location: 2919-4442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3192-3924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 92-3924 bp Feature: domain Description: GIIM Note: maturase Location: 3999-4197 bp Feature: domain Description: GIIM Note: maturase Location: 3999-41 97 bp Feature: gene Location: 4396-4821 bp Feature: gene Location: 5034-5513 bp Feature: domain Description: PHA02517 Location: 5094-5448 bp Feature: domain Description: PHA0251 7 Location: 5094-5448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rep_3 (pfam01051), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: MWLY01000003.1 Salmonella enterica subsp. enterica serovar Bristol strain NCTC 9853 NODE_3_length_399347_cov_47.4142_ID_7312, whole genome shotgun sequence (399347 bp)
Overview 1 RT 1: 334248-340120 bp Neighborhood of RT #1 [334248, 340140] DUF5375 Prim_Zn_Ribbon COG3378 RVT-Retrons TIR_2 HTH_Tnp_1 HTH_Hin_like Feature: gene Location: 334248-334568 bp Feature: domain Description: DUF5375 Location: 334251-334566 bp Feature: domain Description: DUF5375 Location: 3342 51-334566 bp Feature: gene Location: 334583-336916 bp Feature: domain Description: Prim_Zn_Ribbon Location: 334673-334781 bp Feature: domain Description: Prim_Zn_Ribbon Location: 334673-334781 bp Feature: domain Description: COG3378 Location: 335399-336908 bp Feature: domain Description: COG3378 Location: 335399-336908 bp Feature: gene Location: 337505-339136 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 337820-338417 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33782 0-338417 bp Feature: domain Description: TIR_2 Location: 338741-339101 bp Feature: domain Description: TIR_2 Location: 338741-339101 bp Feature: gene Location: 339186-339623 bp Feature: domain Description: HTH_Tnp_1 Location: 339201-339318 bp Feature: domain Description: HTH_Tnp_1 Location: 3392 01-339318 bp Feature: gene Location: 340009-340140 bp Feature: domain Description: HTH_Hin_like Location: 340015-340120 bp Feature: domain Description: HTH_Hin_like Location: 340015-34012 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5375 (pfam17345), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons, TIR_2 (pfam13676), HTH_Tnp_1 (pfam01527), HTH_Hin_like (cd00569)