myRT

myRT report for GCA_002156265.1_ASM215626v1

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Seq: MWLZ01000016.1 Salmonella enterica subsp. enterica serovar Banana strain NCTC 8718 NODE_16_length_83285_cov_112.598_ID_4765, whole genome shotgun sequence (83285 bp)
Overview 1 RT 1: 32229-37673 bp Neighborhood of RT #1 [32229, 37681] PRK09692 RVT-Retrons PRK10473 Feature: gene Location: 32229-33371 bp Feature: domain Description: PRK09692 Location: 32250-33309 bp Feature: domain Description: PRK09692 Location: 32250-33309 bp Feature: gene Location: 33696-34658 bp Feature: gene Location: 34658-35593 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34769-35354 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34769-35354 bp Feature: gene Location: 35851-35979 bp Feature: gene Location: 36494-37681 bp Feature: domain Description: PRK10473 Location: 36497-37673 bp Feature: domain Description: PRK1 0473 Location: 36497-37673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter)

Seq: MWLZ01000002.1 Salmonella enterica subsp. enterica serovar Banana strain NCTC 8718 NODE_2_length_456089_cov_74.3298_ID_4737, whole genome shotgun sequence (456089 bp)
Overview 1 RT 1: 316651-322123 bp Neighborhood of RT #1 [316651, 322137] DUF4156 RVT_N RVT-GII GIIM HNHc groEL Feature: gene Location: 316651-317016 bp Feature: domain Description: DUF4156 Location: 316732-317008 bp Feature: domain Description: DUF4156 Location: 316732 -317008 bp Feature: gene Location: 317367-317690 bp Feature: gene Location: 317695-319392 bp Feature: RT Description: RVT_N Location: 317758-317992 bp Feature: RT Description: RVT_N Location: 317758-317992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 318046-318691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 318046-318691 bp Feature: domain Description: GIIM Note: maturase Location: 318745-318976 bp Feature: domain Description: GIIM Note: maturase Location: 318745-318976 bp Feature: domain Description: HNHc Note: nucleases Location: 319186-319342 bp Feature: domain Description: HNHc Note: nucleases Location: 319186-319342 bp Feature: gene Location: 319824-320150 bp Feature: gene Location: 320491-322137 bp Feature: domain Description: groEL Location: 320497-322123 bp Feature: domain Description: groEL Location: 32 0497-32 2 12 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4156 (pfam13698), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852)