myRT

myRT report for GCA_002157645.1_ASM215764v1

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Seq: BDMQ01000002.1 Photobacterium damselae subsp. piscicida DNA, contig: PDPJ_ctg#2, whole genome shotgun sequence (1010592 bp) Associated domains: DDE_Tnp_IS1 (pfam03400), RVT-GII, GIIM (pfam08388), PRK10996 (thioredoxin 2; Provisional), Redoxin (pfam08534), HTH_1 (pfam00126), PBP2_CrgA_like (cd08422), COG4337 (Uncharacterized protein ), YafK (COG3034), PRK10668 (DNA-binding transcriptional repressor AcrR; Provisional)
LuxT_C (pfam18285), TolC (COG1538), outer_NodT (TIGR01845), OEP (pfam02321), EmrA (COG1566), InsA (COG3677), glgC (TIGR02091), glgA (TIGR02095), CBM41_pullulanase (cl04227), InsE (COG2963)
DUF3387 (pfam11867), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RMtype1_S_BliBORF2384P-TRD1-CR1_like (cd17496), OmpR (COG0745), codB (PRK11017), TAT_signal (pfam10518), Molybdopterin_N (pfam18364), M14_ASTE_ASPA-like (cd06910), PRK11588 (putative basic amino acid antiporter YfcC), YegV_kinase_like (cd01944)
PulG (pfam11773), GH18_chitinase (cd06548), ChiC_BD (cd12215), RecQ (COG0514), DUF406 (pfam04175)

Seq: BDMQ01000001.1 Photobacterium damselae subsp. piscicida DNA, contig: PDPJ_ctg#1, whole genome shotgun sequence (3132149 bp) Associated domains: torC (TIGR02162), NapE (pfam06796), RVT-GII, GIIM (pfam08388), RplT (COG0292), rpmI (PRK00172), InsA (COG3677), dCache_1 (pfam02743), Tar (COG0840), GGDEF (TIGR00254)
YuiF (COG2056), ROF (pfam07073), PRK10824 (Grx4 family monothiol glutaredoxin), PRK10543 (superoxide dismutase ), yeaC (COG3139), DUF2989 (pfam11207), PRK00222 (peptide-methionine (R)-S-oxide reductase MsrB), gapA (PRK15425), PrtC (COG0826), pflA (PRK11145)
PRK13506 (formate--tetrahydrofolate ligase; Provisional), PRK04964 (hypothetical protein; Provisional), DUF4250 (pfam14056), araaP (TIGR00837), ddl (PRK01966), PRK10880 (adenine DNA glycosylase), YggX (COG2924), HC2 (pfam07382), PBP_1b (TIGR02071), PRK11664 (ATP-dependent RNA helicase HrpB; Provisional)
PRK06467 (dihydrolipoamide dehydrogenase; Reviewed), aceF (PRK11854), PRK00418 (DNA gyrase inhibitor YacG), PRK10776 (8-oxo-dGTP diphosphatase MutT), PRK13107 (preprotein translocase subunit SecA; Reviewed), COG4701 (Uncharacterized protein ), PRK10942 (serine endoprotease DegP), protease_degS (TIGR02038), MurA (COG0766), IbaG (COG5007)
PRK11712 (ribonuclease G; Provisional), PRK00032 (septum formation inhibitor Maf), PRK11060 (rod shape-determining protein MreD; Provisional), PRK13922 (rod shape-determining protein MreC; Provisional), PRK11041 (DNA-binding transcriptional regulator CytR; Provisional), FtsN (COG3087), HslV (COG5405), hslU (TIGR00390), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986)
rpmG (PRK00595), RpmB (COG0227), ComFC (COG1040), PRK11190 (iron-sulfur cluster biogenesis protein NfuA), 3D_containing_proteins (cd14667), MATE_DinF_like (cd13136), DUF2500 (pfam10694), Acyl_transf_3 (pfam01757), YdfG (COG4221), ABG_transport (pfam03806)
PRK00299 (sulfurtransferase TusA), Gdt1 (COG2119), srlR (PRK10434), PRK00331 (isomerizing glutamine--fructose-6-phosphate transaminase), PRK11057 (ATP-dependent DNA helicase RecQ; Provisional), PRK11212 (7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter), PRK10930 (FtsH protease activity modulator HflK), hflC (TIGR01932), yjeT (COG3242), TamA (COG0729)
TamB (pfam04357), RHOD (smart00450), PRK01250 (inorganic diphosphatase), RpsU (COG0828), PRK09604 (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD), PRK00220 (glycerol-3-phosphate 1-O-acyltransferase PlsY), folB (TIGR00525), YkaA (COG1392), PPPi (COG3025), KOG3713 (KOG3713, Voltage-gated K+ channel KCNB/KCNC )
PRK11072 (bifunctional adenylyltransferase), parC_Gneg (TIGR01062), PRK15018 (1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional), IPP_Isomerase (cd02885), PRK11401 (enamine/imine deaminase), PRK15026 (aminoacyl-histidine dipeptidase; Provisional), AzgA (COG2252), PRK09177 (xanthine-guanine phosphoribosyltransferase; Validated), PRK04946 (endonuclease SmrB), PRK11805 (50S ribosomal protein L3 N(5)-glutamine methyltransferase)
PRK11106 (queuosine biosynthesis protein QueC; Provisional), CysK (COG0031), PRK08974 (long-chain-fatty-acid--CoA ligase FadD), PRK10829 (ribonuclease D; Provisional), minE (TIGR01215), PRK10818 (septum site-determining protein MinD), COG4890 (Predicted outer membrane lipoprotein ), Cyd_oper_YbgE (pfam09600), thio_ybgC (TIGR02799), PRK10801 (Tol-Pal system protein TolQ)
DUF2498 (pfam10692), PRK07561 (DNA topoisomerase I subunit omega; Validated), MiaE (pfam06175), PRK05560 (DNA gyrase subunit A; Validated), PRK05355 (3-phosphoserine/phosphohydroxythreonine transaminase), YddA (COG4178), grxA (PRK11200), Fe-ADH-like (cd17814), PRK10659 (acetate uptake transporter), LolD_lipo_ex (TIGR02211)
PRK11146 (lipoprotein-releasing ABC transporter permease subunit LolE), kdsB (TIGR00466), RaiA (COG1544), TcyP (COG1823), PRK10494 (envelope biogenesis factor ElyC), PRK03784 (vtamin B12-transporter permease; Provisional), PRK03695 (vitamin B12-transporter ATPase; Provisional), YccC (COG1289), PRK03818 (putative transporter; Validated), potA (TIGR01187)
COG5473 (Uncharacterized membrane protein ), DUF2987 (pfam11205), PRK05469 (tripeptide aminopeptidase PepT), PqiA (pfam04403), PqiB (COG3008), PRK10807 (intermembrane transport protein PqiB), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), HypB (COG0378), COG3671 (Uncharacterized membrane protein )
heme_HutZ (TIGR04110), acyl_WS_DGAT (TIGR02946), PRK11598 (putative metal dependent hydrolase; Provisional), YCCS_YHJK (TIGR01667)

Seq: BDMQ01000003.1 Photobacterium damselae subsp. piscicida DNA, contig: PDPJ_ctg#3, whole genome shotgun sequence (145279 bp) Associated domains: InsA (COG3677), RVT-GII, GIIM (pfam08388), Ivy (pfam08816)