myRT

myRT report for GCA_002159185.1_ASM215918v1

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Seq: NFHD01000030.1 Gemmiger sp. An87 An87_contig_30, whole genome shotgun sequence (40779 bp)
Overview 1 RT 1: 12240-16377 bp Neighborhood of RT #1 [12240, 16391] FlgJ Amidase_2 SH3_3 SH3_3 RVT-DGRs Avd_like Feature: gene Location: 12240-13826 bp Feature: domain Description: FlgJ Location: 12297-12780 bp Feature: domain Description: FlgJ Location: 1 2297-1 2780 bp Feature: domain Description: Amidase_2 Location: 12840-13284 bp Feature: domain Description: Amidase_2 Location: 1 2840-1 3284 bp Feature: domain Description: SH3_3 Location: 13443-13572 bp Feature: domain Description: SH3_3 Location: 1 3443-1 3572 bp Feature: domain Description: SH3_3 Location: 13659-13818 bp Feature: domain Description: SH3_3 Location: 1 3659-1 381 8 bp Feature: gene Location: 13830-14360 bp Feature: gene Location: 14475-15689 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14688-15348 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 4688-1 5348 bp Feature: gene Location: 15646-16005 bp Feature: gene Location: 16002-16391 bp Feature: domain Description: Avd_like Location: 16056-16377 bp Feature: domain Description: Avd_like Location: 1 6056-1 6377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FlgJ (COG1705), Amidase_2 (pfam01510), SH3_3 (pfam08239), RVT-DGRs, Avd_like (cd16376)

Seq: NFHD01000022.1 Gemmiger sp. An87 An87_contig_22, whole genome shotgun sequence (55297 bp)
Overview 1 RT 1: 7170-11444 bp Neighborhood of RT #1 [7170, 11444] Maff2 RVT-GII HNHc Maff2 Feature: gene Location: 7170-7397 bp Feature: gene Location: 7584-7715 bp Feature: domain Description: Maff2 Location: 7587-7713 bp Feature: domain Description: Maff2 Location: 7587-7713 bp Feature: gene Location: 8435-10312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8762-9500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8762 -9500 bp Feature: domain Description: HNHc Note: nucleases Location: 10040-10196 bp Feature: domain Description: HNHc Note: nucleases Location: 10040-10196 bp Feature: gene Location: 10414-10560 bp Feature: domain Description: Maff2 Location: 10465-10555 bp Feature: domain Description: Maff2 Location: 10465-10555 bp Feature: gene Location: 10578-11444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), RVT-GII, HNHc (smart00507)

Seq: NFHD01000012.1 Gemmiger sp. An87 An87_contig_12, whole genome shotgun sequence (98704 bp)
Overview 1 RT 1: 67-4117 bp Neighborhood of RT #1 [67, 4311] RVT-GII ER_like_FMN Pyr_redox_2 FadH2 PadR Feature: gene Location: 67-981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 316-928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 16-928 bp Feature: gene Location: 1610-3604 bp Feature: domain Description: ER_like_FMN Location: 1631-2771 bp Feature: domain Description: ER_like_FMN Location: 163 1-2771 bp Feature: domain Description: Pyr_redox_2 Location: 2804-3056 bp Feature: domain Description: Pyr_redox_2 Location: 2804-3 056 bp Feature: domain Description: FadH2 Location: 3074-3491 bp Feature: domain Description: FadH2 Location: 3 074-3 491 bp Feature: gene Location: 3760-4311 bp Feature: domain Description: PadR Location: 3769-4117 bp Feature: domain Description: PadR Location: 3 769-4117 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ER_like_FMN (cd02931), Pyr_redox_2 (pfam07992), FadH2 (COG0446), PadR (pfam03551), RVT-GII

Seq: NFHD01000011.1 Gemmiger sp. An87 An87_contig_11, whole genome shotgun sequence (106609 bp)
Overview 1 RT 1: 93375-98597 bp Neighborhood of RT #1 [93375, 98617] DUF3801 DUF3801 VirD4 RVT-GII TraG-D_C TnpV Feature: gene Location: 93375-93860 bp Feature: domain Description: DUF3801 Location: 93492-93738 bp Feature: domain Description: DUF3801 Location: 934 92-93738 bp Feature: domain Description: DUF3801 Location: 93753-93840 bp Feature: domain Description: DUF3801 Location: 93753-9384 0 bp Feature: gene Location: 93857-94654 bp Feature: domain Description: VirD4 Location: 94115-94607 bp Feature: domain Description: VirD4 Location: 94 115-94 607 bp Feature: gene Location: 95286-97193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95619-96363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95619-96363 bp Feature: gene Location: 97356-98174 bp Feature: domain Description: TraG-D_C Location: 97806-98118 bp Feature: domain Description: TraG-D_C Location: 97806-98118 bp Feature: gene Location: 98228-98617 bp Feature: domain Description: TnpV Location: 98273-98597 bp Feature: domain Description: TnpV Location: 98273-98597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII, TraG-D_C (pfam12696), TnpV (pfam14198)