myRT

myRT report for GCA_002159215.1_ASM215921v1

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Seq: NFHB01000003.1 Alistipes onderdonkii strain An90 An90_contig_3, whole genome shotgun sequence (482529 bp)
Overview 1 RT 1: 253438-265075 bp 2 RT 2: 351468-357787 bp Neighborhood of RT #1 [253438, 265140] DUF1896 N6_Mtase COG4646 matK RVT-GII Intron_maturas2 RVT_N RVT-GII GIIM RpoE Neighborhood of RT #2 [351468, 357787] Bac_Flav_CT_G DUF4133 RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 253438-253878 bp Feature: domain Description: DUF1896 Location: 253459-253876 bp Feature: domain Description: DUF1 896 Location: 253459-253876 bp Feature: gene Location: 253868-256969 bp Feature: domain Description: N6_Mtase Location: 254180-254816 bp Feature: domain Description: N6_Mtase Location: 2541 80-25481 6 bp Feature: domain Description: COG4646 Location: 256091-256958 bp Feature: domain Description: COG4646 Location: 256091 -256958 bp Feature: gene Location: 257521-259323 bp Feature: domain Description: matK Location: 257590-257749 bp Feature: domain Description: matK Location: 257590-257749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257785-258607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257785-258607 bp Feature: domain Description: Intron_maturas2 Location: 258766-258991 bp Feature: domain Description: Intron_maturas2 Location: 258766-258991 bp Feature: gene Location: 259401-260944 bp Feature: gene Location: 261601-263268 bp Feature: RT Description: RVT_N Location: 261655-261898 bp Feature: RT Description: RVT_N Location: 261 655-261 898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261943-262591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261 943-262591 bp Feature: domain Description: GIIM Note: maturase Location: 262645-262876 bp Feature: domain Description: GIIM Note: maturase Location: 262645-262876 bp Feature: gene Location: 263270-264493 bp Feature: gene Location: 264532-265140 bp Feature: domain Description: RpoE Location: 264577-265075 bp Feature: domain Description: RpoE Location: 264577-265075 bp Feature: gene Location: 351468-353978 bp Feature: domain Description: Bac_Flav_CT_G Location: 351471-353955 bp Feature: domain Description: Bac_Flav_CT_G Location: 351 471 -353955 bp Feature: gene Location: 353983-354372 bp Feature: domain Description: DUF4133 Location: 354094-354322 bp Feature: domain Description: DUF41 33 Location: 354094-354322 bp Feature: gene Location: 354375-356192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354639-355461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354639-355461 bp Feature: domain Description: Intron_maturas2 Location: 355536-355863 bp Feature: domain Description: Intron_maturas2 Location: 355536-355863 bp Feature: domain Description: HNHc Note: nucleases Location: 356016-356166 bp Feature: domain Description: HNHc Note: nucleases Location: 35601 6-3561 66 bp Feature: gene Location: 356810-357106 bp Feature: domain Description: DUF4134 Location: 356828-357101 bp Feature: domain Description: DUF41 34 Location: 356828-3571 01 bp Feature: gene Location: 357251-357787 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), RVT_N (pfam13655), GIIM (pfam08388), RpoE (COG3343), Bac_Flav_CT_G (TIGR03783)
DUF4133 (pfam13571), HNHc (smart00507), DUF4134 (pfam13572)