myRT

myRT report for GCA_002159375.1_ASM215937v1

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Seq: NFIA01000020.1 Alistipes sp. An54 An54_contig_20, whole genome shotgun sequence (36538 bp)
Overview 1 RT 1: 25236-29995 bp Neighborhood of RT #1 [25236, 29995] AbiEii MPP_MS158 RVT-Retrons HTH_17 Feature: gene Location: 25236-26012 bp Feature: domain Description: AbiEii Location: 25281-25887 bp Feature: domain Description: AbiEii Location: 25281 -25887 bp Feature: gene Location: 26009-26779 bp Feature: domain Description: MPP_MS158 Location: 26018-26720 bp Feature: domain Description: MPP_MS1 58 Location: 2601 8-26720 bp Feature: gene Location: 26980-28713 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27130-27727 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 271 30-27727 bp Feature: gene Location: 29382-29678 bp Feature: domain Description: HTH_17 Location: 29499-29643 bp Feature: domain Description: HTH_1 7 Location: 29499-29643 bp Feature: gene Location: 29684-29995 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), MPP_MS158 (cd07404), RVT-Retrons, HTH_17 (pfam12728)

Seq: NFIA01000006.1 Alistipes sp. An54 An54_contig_6, whole genome shotgun sequence (216731 bp)
Overview 1 RT 1: 16009-21846 bp Neighborhood of RT #1 [16009, 21846] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Feature: gene Location: 16009-18408 bp Feature: domain Description: Bac_Flav_CT_G Location: 16012-18400 bp Feature: domain Description: Bac_Flav_CT_G Location: 16012 -18400 bp Feature: gene Location: 18463-18924 bp Feature: gene Location: 18956-20779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19220-20039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192 2 0-2 0039 bp Feature: domain Description: Intron_maturas2 Location: 20213-20453 bp Feature: domain Description: Intron_maturas2 Location: 2 02 13-2 0453 bp Feature: domain Description: HNHc Note: nucleases Location: 20570-20741 bp Feature: domain Description: HNHc Note: nucleases Location: 2 0570-2 0741 bp Feature: gene Location: 21017-21397 bp Feature: gene Location: 21394-21846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFIA01000021.1 Alistipes sp. An54 An54_contig_21, whole genome shotgun sequence (33904 bp)
Overview 1 RT 1: 1906-5810 bp Neighborhood of RT #1 [1906, 5810] RVT-DGRs Feature: gene Location: 1906-2322 bp Feature: gene Location: 2336-2683 bp Feature: gene Location: 2697-3719 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2907-3504 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2907-3 504 bp Feature: gene Location: 4067-5533 bp Feature: gene Location: 5535-5810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs