myRT

myRT report for GCA_002159465.1_ASM215946v1

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Seq: NFIR01000033.1 Eubacterium sp. An3 An3_contig_33, whole genome shotgun sequence (30752 bp)
Overview 1 RT 1: 16932-24208 bp Neighborhood of RT #1 [16932, 24924] ParM_like TraG-D_C RVT-GII HNHc T4SS-DNA_transf DUF3801 DUF3801 Feature: gene Location: 16932-18074 bp Feature: domain Description: ParM_like Location: 17010-18048 bp Feature: domain Description: ParM_like Location: 1 701 0-1 8048 bp Feature: gene Location: 18425-19309 bp Feature: domain Description: TraG-D_C Location: 18428-18623 bp Feature: domain Description: TraG-D_C Location: 1 8428-1 8623 bp Feature: gene Location: 19467-21386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19803-20541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9803-20541 bp Feature: domain Description: HNHc Note: nucleases Location: 21093-21255 bp Feature: domain Description: HNHc Note: nucleases Location: 21 093-21 255 bp Feature: gene Location: 22060-23538 bp Feature: domain Description: T4SS-DNA_transf Location: 22540-23500 bp Feature: domain Description: T4SS-DNA_transf Location: 22540-23500 bp Feature: gene Location: 23551-24924 bp Feature: domain Description: DUF3801 Location: 23701-23890 bp Feature: domain Description: DUF3801 Location: 23701 -23890 bp Feature: domain Description: DUF3801 Location: 23968-24208 bp Feature: domain Description: DUF3801 Location: 23968-24208 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParM_like (cd10227), TraG-D_C (pfam12696), RVT-GII, HNHc (smart00507), T4SS-DNA_transf (pfam02534), DUF3801 (pfam12687)

Seq: NFIR01000005.1 Eubacterium sp. An3 An3_contig_5, whole genome shotgun sequence (181685 bp)
Overview 1 RT 1: 3782-10186 bp Neighborhood of RT #1 [3782, 10186] ABC2_membrane dcm RVT-GII HNHc Dcm Feature: gene Location: 3782-4525 bp Feature: domain Description: ABC2_membrane Location: 3797-4415 bp Feature: domain Description: ABC2 _membrane Location: 3797-4415 bp Feature: gene Location: 5408-6064 bp Feature: domain Description: dcm Location: 5447-6032 bp Feature: domain Description: dcm Location: 5447-6032 bp Feature: gene Location: 6233-8149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6581-7319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6581-7319 bp Feature: domain Description: HNHc Note: nucleases Location: 7874-8039 bp Feature: domain Description: HNHc Note: nucleases Location: 7874-8039 bp Feature: gene Location: 8829-9245 bp Feature: domain Description: Dcm Location: 8871-9231 bp Feature: domain Description: Dcm Location: 8871-92 31 bp Feature: gene Location: 9707-10186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC2_membrane (pfam01061), dcm (TIGR00675), RVT-GII, HNHc (smart00507), Dcm (COG0270)

Seq: NFIR01000001.1 Eubacterium sp. An3 An3_contig_1, whole genome shotgun sequence (511194 bp)
Overview 1 RT 1: 340114-345732 bp 2 RT 2: 506258-510863 bp Neighborhood of RT #1 [340114, 345732] Tas RVT-GII DUF1538 DUF1538 Neighborhood of RT #2 [506258, 510874] HTH_16 HTH_26 RVT-GII GIIM IS285 Feature: gene Location: 340114-341112 bp Feature: domain Description: Tas Location: 340117-341065 bp Feature: domain Description: Tas Location: 3 40117-3 41065 bp Feature: gene Location: 341598-341762 bp Feature: gene Location: 341702-343179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342113-342518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 42113 -3 42518 bp Feature: gene Location: 343487-345004 bp Feature: domain Description: DUF1538 Location: 343544-344159 bp Feature: domain Description: DUF153 8 Location: 3 43 544-3 44159 bp Feature: domain Description: DUF1538 Location: 344291-344915 bp Feature: domain Description: DUF153 8 Location: 3 44291-3 44915 bp Feature: gene Location: 345001-345732 bp Feature: gene Location: 506258-506446 bp Feature: domain Description: HTH_16 Location: 506273-506435 bp Feature: domain Description: HTH_16 Location: 506273 -50643 5 bp Feature: gene Location: 506830-507099 bp Feature: domain Description: HTH_26 Location: 506833-506980 bp Feature: domain Description: HTH_26 Location: 50683 3 -506980 bp Feature: gene Location: 507745-509061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 508006-508699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 508006-508699 bp Feature: domain Description: GIIM Note: maturase Location: 508768-508972 bp Feature: domain Description: GIIM Note: maturase Location: 508768-508972 bp Feature: gene Location: 509245-509490 bp Feature: gene Location: 509660-510874 bp Feature: domain Description: IS285 Location: 509699-510863 bp Feature: domain Description: IS285 Location: 509699-510863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tas (COG0667), RVT-GII, DUF1538 (pfam07556), HTH_16 (pfam12645), HTH_26 (pfam13443), GIIM (pfam08388), IS285 (COG3328)

Seq: NFIR01000028.1 Eubacterium sp. An3 An3_contig_28, whole genome shotgun sequence (43934 bp)
Overview 1 RT 1: 29029-32547 bp Neighborhood of RT #1 [29029, 32547] HTH_36 RVT-GII GIIM Feature: gene Location: 29029-29919 bp Feature: domain Description: HTH_36 Location: 29104-29251 bp Feature: domain Description: HTH_36 Location: 29104 -29251 bp Feature: gene Location: 30173-30367 bp Feature: gene Location: 30459-31748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30750-31383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30750-31383 bp Feature: domain Description: GIIM Note: maturase Location: 31464-31683 bp Feature: domain Description: GIIM Note: maturase Location: 314 64 -31683 bp Feature: gene Location: 31931-32239 bp Feature: gene Location: 32236-32547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_36 (pfam13730), RVT-GII, GIIM (pfam08388)

Seq: NFIR01000018.1 Eubacterium sp. An3 An3_contig_18, whole genome shotgun sequence (75077 bp)
Overview 1 RT 1: 52366-55992 bp Neighborhood of RT #1 [52366, 56009] RpoE HTH_16 RVT-GII GIIM OmpR Feature: gene Location: 52366-52797 bp Feature: domain Description: RpoE Location: 52384-52783 bp Feature: domain Description: RpoE Location: 5 2384-5 2783 bp Feature: gene Location: 52794-53036 bp Feature: domain Description: HTH_16 Location: 52839-53022 bp Feature: domain Description: HTH_16 Location: 5 2839-5 3022 bp Feature: gene Location: 53099-54490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53414-54038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 3414-5 4038 bp Feature: domain Description: GIIM Note: maturase Location: 54095-54311 bp Feature: domain Description: GIIM Note: maturase Location: 5 4095 -5 4311 bp Feature: gene Location: 54599-54751 bp Feature: gene Location: 55317-56009 bp Feature: domain Description: OmpR Location: 55326-55992 bp Feature: domain Description: OmpR Location: 5 5 326-5 5 992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpoE (COG3343), HTH_16 (pfam12645), RVT-GII, GIIM (pfam08388), OmpR (COG0745)

Seq: NFIR01000020.1 Eubacterium sp. An3 An3_contig_20, whole genome shotgun sequence (65897 bp)
Overview 1 RT 1: 1347-5884 bp Neighborhood of RT #1 [1347, 5884] Maff2 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1347-1562 bp Feature: domain Description: Maff2 Location: 1350-1557 bp Feature: domain Description: Maff2 Location: 1350-1557 bp Feature: gene Location: 1645-2298 bp Feature: gene Location: 2875-4707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3139-3970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3139-3970 bp Feature: domain Description: Intron_maturas2 Location: 4039-4357 bp Feature: domain Description: Intron_maturas2 Location: 4039-4357 bp Feature: domain Description: HNHc Note: nucleases Location: 4507-4678 bp Feature: domain Description: HNHc Note: nucleases Location: 4507-46 78 bp Feature: gene Location: 4783-5085 bp Feature: gene Location: 5276-5884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)