myRT

myRT report for GCA_002159665.1_ASM215966v1

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Seq: NFJC01000041.1 Desulfovibrio sp. An276 An276_contig_41, whole genome shotgun sequence (23950 bp)
Overview 1 RT 1: 860-5622 bp Neighborhood of RT #1 [860, 5780] RVT-GII GIIM PRK05443 HDc Feature: gene Location: 860-2128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1052-1670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 052-1 670 bp Feature: domain Description: GIIM Note: maturase Location: 1718-1940 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 8-1 940 bp Feature: gene Location: 2510-4873 bp Feature: domain Description: PRK05443 Location: 2771-4847 bp Feature: domain Description: PRK05443 Location: 2771 -4847 bp Feature: gene Location: 4926-5780 bp Feature: domain Description: HDc Location: 5208-5622 bp Feature: domain Description: HDc Location: 5208-5622 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05443 (polyphosphate kinase; Provisional), HDc (smart00471), RVT-GII, GIIM (pfam08388)

Seq: NFJC01000017.1 Desulfovibrio sp. An276 An276_contig_17, whole genome shotgun sequence (64287 bp)
Overview 1 RT 1: 8562-12575 bp Neighborhood of RT #1 [8562, 12575] RuvC RVT-Retrons Feature: gene Location: 8562-8888 bp Feature: gene Location: 8889-9527 bp Feature: domain Description: RuvC Location: 9000-9438 bp Feature: domain Description: RuvC Location: 9000-9438 bp Feature: gene Location: 9713-10867 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9848-10394 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9848-10394 bp Feature: gene Location: 10882-11421 bp Feature: gene Location: 11568-12575 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RuvC (pfam02075), RVT-Retrons

Seq: NFJC01000004.1 Desulfovibrio sp. An276 An276_contig_4, whole genome shotgun sequence (124754 bp)
Overview 1 RT 1: 48-3883 bp Neighborhood of RT #1 [48, 3906] RVT-GII GIIM GntR NhaC Feature: gene Location: 48-1316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240-858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240-858 bp Feature: domain Description: GIIM Note: maturase Location: 906-1128 bp Feature: domain Description: GIIM Note: maturase Location: 906-1128 bp Feature: gene Location: 1406-2071 bp Feature: domain Description: GntR Location: 1430-2057 bp Feature: domain Description: GntR Location: 143 0-2057 bp Feature: gene Location: 2524-3906 bp Feature: domain Description: NhaC Location: 2587-3883 bp Feature: domain Description: NhaC Location: 2587-3 883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GntR (pfam00392), NhaC (COG1757), RVT-GII, GIIM (pfam08388)

Seq: NFJC01000037.1 Desulfovibrio sp. An276 An276_contig_37, whole genome shotgun sequence (28193 bp)
Overview 1 RT 1: 172-4553 bp Neighborhood of RT #1 [172, 5149] RVT-DGRs IAT_beta Big_1 Big_1 Big_1 Big_1 Big_1 Feature: gene Location: 172-690 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 175-331 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 175-331 bp Feature: gene Location: 1199-1681 bp Feature: gene Location: 1808-5149 bp Feature: domain Description: IAT_beta Location: 2399-3188 bp Feature: domain Description: IAT_beta Location: 2399-3188 bp Feature: domain Description: Big_1 Location: 3257-3356 bp Feature: domain Description: Big_1 Location: 3257-3356 bp Feature: domain Description: Big_1 Location: 3434-3521 bp Feature: domain Description: Big_1 Location: 34 34 -3521 bp Feature: domain Description: Big_1 Location: 3632-3800 bp Feature: domain Description: Big_1 Location: 3632-3800 bp Feature: domain Description: Big_1 Location: 4196-4358 bp Feature: domain Description: Big_1 Location: 4 196-4 358 bp Feature: domain Description: Big_1 Location: 4460-4553 bp Feature: domain Description: Big_1 Location: 4 4 60-4 553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, IAT_beta (pfam11924), Big_1 (pfam02369)