myRT

myRT report for GCA_002159865.1_ASM215986v1

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Seq: NFJM01000018.1 Flavonifractor plautii strain An248 An248_contig_18, whole genome shotgun sequence (83085 bp)
Overview 1 RT 1: 16038-21159 bp Neighborhood of RT #1 [16038, 21191] Maff2 VirD4 RVT-GII Intron_maturas2 HNHc DUF3801 Feature: gene Location: 16038-16196 bp Feature: domain Description: Maff2 Location: 16041-16191 bp Feature: domain Description: Maff2 Location: 1 6041 -1 61 91 bp Feature: gene Location: 16437-17729 bp Feature: domain Description: VirD4 Location: 16452-17613 bp Feature: domain Description: VirD4 Location: 1 6452-1 761 3 bp Feature: gene Location: 17838-19655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18102-18921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 02-1 8921 bp Feature: domain Description: Intron_maturas2 Location: 18990-19323 bp Feature: domain Description: Intron_maturas2 Location: 1 8990-1 9323 bp Feature: domain Description: HNHc Note: nucleases Location: 19479-19620 bp Feature: domain Description: HNHc Note: nucleases Location: 1 9479-1 9620 bp Feature: gene Location: 20239-20718 bp Feature: gene Location: 20715-21191 bp Feature: domain Description: DUF3801 Location: 20793-21159 bp Feature: domain Description: DUF3801 Location: 20793-21 1 59 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), VirD4 (COG3505), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3801 (pfam12687)

Seq: NFJM01000004.1 Flavonifractor plautii strain An248 An248_contig_4, whole genome shotgun sequence (234310 bp)
Overview 1 RT 1: 118048-123757 bp Neighborhood of RT #1 [118048, 123757] RVT-DGRs Big_3 Big_3 Feature: gene Location: 118048-118533 bp Feature: gene Location: 118526-118855 bp Feature: gene Location: 118870-120045 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 119122-119677 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11912 2 -119677 bp Feature: gene Location: 120565-123303 bp Feature: domain Description: Big_3 Location: 120661-120862 bp Feature: domain Description: Big_3 Location: 12 0661-12 0862 bp Feature: domain Description: Big_3 Location: 120898-121102 bp Feature: domain Description: Big_3 Location: 12 0898-12 1102 bp Feature: gene Location: 123296-123757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Big_3 (pfam07523)

Seq: NFJM01000030.1 Flavonifractor plautii strain An248 An248_contig_30, whole genome shotgun sequence (22050 bp)
Overview 1 RT 1: 1-5289 bp Neighborhood of RT #1 [1, 5289] RVT-GII COG4932 Feature: gene Location: 1-222 bp Feature: gene Location: 943-2829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1261-1966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1261-1966 bp Feature: gene Location: 3045-4502 bp Feature: domain Description: COG4932 Location: 3768-4500 bp Feature: domain Description: COG493 2 Location: 3 768-4500 bp Feature: gene Location: 4489-5289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4932 (Uncharacterized surface anchored protein ), RVT-GII

Seq: NFJM01000026.1 Flavonifractor plautii strain An248 An248_contig_26, whole genome shotgun sequence (35771 bp)
Overview 1 RT 1: 576-4781 bp Neighborhood of RT #1 [576, 4781] RVT-GII Intron_maturas2 HNHc TraC-F-type Feature: gene Location: 576-2375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 6-1659 bp Feature: domain Description: Intron_maturas2 Location: 1740-2031 bp Feature: domain Description: Intron_maturas2 Location: 174 0-2031 bp Feature: domain Description: HNHc Note: nucleases Location: 2199-2355 bp Feature: domain Description: HNHc Note: nucleases Location: 2199-2355 bp Feature: gene Location: 2495-3982 bp Feature: domain Description: TraC-F-type Location: 2540-3836 bp Feature: domain Description: TraC-F-type Location: 254 0-3836 bp Feature: gene Location: 3963-4781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFJM01000017.1 Flavonifractor plautii strain An248 An248_contig_17, whole genome shotgun sequence (83329 bp)
Overview 1 RT 1: 25555-31696 bp Neighborhood of RT #1 [25555, 31761] ALDH_Acyl-CoA-Red_LuxC PRK08279 FACL_like_6 RVT-Retrons TrmO TrmO_C Feature: gene Location: 25555-26745 bp Feature: domain Description: ALDH_Acyl-CoA-Red_LuxC Location: 25777-26731 bp Feature: domain Description: ALDH_Acyl-CoA-Red_LuxC Location: 25 777-26731 bp Feature: gene Location: 26755-28188 bp Feature: domain Description: PRK08279 Location: 26782-27043 bp Feature: domain Description: PRK08279 Location: 26782-27043 bp Feature: domain Description: FACL_like_6 Location: 27127-28177 bp Feature: domain Description: FACL_like_6 Location: 27127-28177 bp Feature: gene Location: 28481-29404 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28595-29141 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 285 95 -29141 bp Feature: gene Location: 29421-31016 bp Feature: gene Location: 31054-31761 bp Feature: domain Description: TrmO Location: 31111-31480 bp Feature: domain Description: TrmO Location: 31111-31480 bp Feature: domain Description: TrmO_C Location: 31534-31696 bp Feature: domain Description: TrmO_C Location: 315 34-31696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ALDH_Acyl-CoA-Red_LuxC (cd07080), PRK08279 (long-chain-acyl-CoA synthetase; Validated), FACL_like_6 (cd05922), RVT-Retrons, TrmO, TrmO_C (pfam18389)