myRT

myRT report for GCA_002160055.1_ASM216005v1

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Seq: NFJV01000087.1 Mediterranea sp. An20 An20_contig_87, whole genome shotgun sequence (533 bp)
Overview 1 RT 1: 1-529 bp Neighborhood of RT #1 [1, 533] RVT-GII Feature: gene Location: 1-533 bp Ori: OUP03711.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100-529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 00-529 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NFJV01000039.1 Mediterranea sp. An20 An20_contig_39, whole genome shotgun sequence (26253 bp)
Overview 1 RT 1: 8446-15126 bp Neighborhood of RT #1 [8446, 15689] HTH_XRE FIDO RVT-UG3 RVT-UG8 HTH_3 Mod Mod Feature: gene Location: 8446-8649 bp Ori: OUP05876.1 Feature: domain Description: HTH_XRE Location: 8467-8629 bp Feature: domain Description: HTH_XRE Location: 8467-862 9 bp Feature: gene Location: 8748-9308 bp Ori: OUP05863.1 Feature: domain Description: FIDO Location: 8760-9288 bp Feature: domain Description: FIDO Location: 8760-92 88 bp Feature: gene Location: 9522-10985 bp Ori: OUP05864.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 9978-10509 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 9978-10509 bp Feature: gene Location: 10976-13171 bp Ori: OUP05865.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 11600-12056 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 11600-12 056 bp Feature: gene Location: 13438-13647 bp Ori: OUP05866.1 Feature: domain Description: HTH_3 Location: 13480-13627 bp Feature: domain Description: HTH_3 Location: 13480-1362 7 bp Feature: gene Location: 13878-15689 bp Ori: OUP05867.1 Feature: domain Description: Mod Location: 14115-14787 bp Feature: domain Description: Mod Location: 14115-14787 bp Feature: domain Description: Mod Location: 14904-15126 bp Feature: domain Description: Mod Location: 14904-1512 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), FIDO (COG2184), RVT-UG3, RVT-UG8, HTH_3 (pfam01381), Mod (COG2189)

Seq: NFJV01000027.1 Mediterranea sp. An20 An20_contig_27, whole genome shotgun sequence (48118 bp)
Overview 1 RT 1: 19229-24283 bp Neighborhood of RT #1 [19229, 24283] YWFCY RVT-GII Intron_maturas2 HNHc TraG-D_C Feature: gene Location: 19229-20218 bp Feature: domain Description: YWFCY Location: 19235-19412 bp Feature: domain Description: YWFCY Location: 1923 5-19412 bp Feature: gene Location: 20277-20750 bp Feature: gene Location: 20784-22589 bp Ori: OUP06601.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21048-21870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21048-21870 bp Feature: domain Description: Intron_maturas2 Location: 21945-22278 bp Feature: domain Description: Intron_maturas2 Location: 21945-22278 bp Feature: domain Description: HNHc Note: nucleases Location: 22422-22566 bp Feature: domain Description: HNHc Note: nucleases Location: 22422-22566 bp Feature: gene Location: 22576-23739 bp Ori: OUP06629.1 Feature: domain Description: TraG-D_C Location: 23101-23434 bp Feature: domain Description: TraG-D_C Location: 23 101-23 43 4 bp Feature: gene Location: 24020-24283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TraG-D_C (pfam12696)

Seq: NFJV01000045.1 Mediterranea sp. An20 An20_contig_45, whole genome shotgun sequence (19822 bp)
Overview 1 RT 1: 35-6369 bp Neighborhood of RT #1 [35, 6369] N6_Mtase COG4646 COG4646 RVT-GII GIIM Feature: gene Location: 35-3145 bp Ori: OUP05661.1 Feature: domain Description: N6_Mtase Location: 578-938 bp Feature: domain Description: N6_Mtase Location: 578-938 bp Feature: domain Description: COG4646 Location: 1472-1643 bp Feature: domain Description: COG4 64 6 Location: 14 72-164 3 bp Feature: domain Description: COG4646 Location: 1721-3089 bp Feature: domain Description: COG4 64 6 Location: 1721-3089 bp Feature: gene Location: 3574-4980 bp Ori: OUP05662.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3916-4534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3916-4 534 bp Feature: domain Description: GIIM Note: maturase Location: 4585-4819 bp Feature: domain Description: GIIM Note: maturase Location: 4 585-4 819 bp Feature: gene Location: 5460-6089 bp Feature: gene Location: 6145-6369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, GIIM (pfam08388)

Seq: NFJV01000033.1 Mediterranea sp. An20 An20_contig_33, whole genome shotgun sequence (38153 bp)
Overview 1 RT 1: 40-3196 bp Neighborhood of RT #1 [40, 3216] RVT-GII GIIM SnoaL ARO8 Feature: gene Location: 40-870 bp Ori: OUP06166.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43-424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43-424 bp Feature: domain Description: GIIM Note: maturase Location: 478-688 bp Feature: domain Description: GIIM Note: maturase Location: 478-688 bp Feature: gene Location: 1117-1515 bp Ori: OUP06167.1 Feature: domain Description: SnoaL Location: 1123-1489 bp Feature: domain Description: SnoaL Location: 1123-1489 bp Feature: gene Location: 1804-3216 bp Ori: OUP06147.1 Feature: domain Description: ARO8 Location: 1858-3196 bp Feature: domain Description: ARO8 Location: 185 8-3196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), SnoaL (pfam07366), ARO8 (COG1167)

Seq: NFJV01000081.1 Mediterranea sp. An20 An20_contig_81, whole genome shotgun sequence (722 bp)
Overview 1 RT 1: 1-718 bp Neighborhood of RT #1 [1, 722] RVT-GII Feature: gene Location: 1-722 bp Ori: OUP03901.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100-718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100-718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII