myRT

myRT report for GCA_002160135.1_ASM216013v1

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Seq: NFJZ01000009.1 Lachnoclostridium sp. An196 An196_contig_9, whole genome shotgun sequence (160149 bp)
Overview 1 RT 1: 3729-8347 bp 2 RT 2: 139325-143413 bp Neighborhood of RT #1 [3729, 8445] RVT-DGRs DUF16 Phage_holin_6_1 Neighborhood of RT #2 [139325, 143454] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 3729-4859 bp Feature: gene Location: 4932-5546 bp Feature: gene Location: 5855-7045 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6059-6668 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6059-6668 bp Feature: gene Location: 7598-7930 bp Feature: domain Description: DUF16 Location: 7607-7829 bp Feature: domain Description: DUF1 6 Location: 7607-7829 bp Feature: gene Location: 8038-8445 bp Feature: domain Description: Phage_holin_6_1 Location: 8041-8347 bp Feature: domain Description: Phage_holin_6_1 Location: 8041 -8347 bp Feature: gene Location: 139325-140296 bp Feature: gene Location: 140353-140880 bp Feature: gene Location: 141141-142442 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 141327-142065 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 41 327-1 42065 bp Feature: gene Location: 142439-142660 bp Feature: gene Location: 143014-143454 bp Feature: domain Description: Phage_holin_4_1 Location: 143059-143413 bp Feature: domain Description: Phage_holin_4_1 Location: 1 43059-1 4341 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF16 (pfam01519), Phage_holin_6_1 (pfam09682), Phage_holin_4_1 (pfam05105)

Seq: NFJZ01000012.1 Lachnoclostridium sp. An196 An196_contig_12, whole genome shotgun sequence (93805 bp)
Overview 1 RT 1: 5676-7934 bp Neighborhood of RT #1 [5676, 7934] Avd_like PHA00653 RVT-DGRs Feature: gene Location: 5676-6032 bp Feature: domain Description: Avd_like Location: 5706-6006 bp Feature: domain Description: Avd_like Location: 5706-6006 bp Feature: gene Location: 6040-6270 bp Feature: domain Description: PHA00653 Location: 6061-6193 bp Feature: domain Description: PHA00653 Location: 6061-6193 bp Feature: gene Location: 6355-7425 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6592-7213 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6592 -72 13 bp Feature: gene Location: 7426-7614 bp Feature: gene Location: 7617-7934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), PHA00653 (mtd;major tropism determinant), RVT-DGRs

Seq: NFJZ01000003.1 Lachnoclostridium sp. An196 An196_contig_3, whole genome shotgun sequence (267589 bp)
Overview 1 RT 1: 248817-259799 bp Neighborhood of RT #1 [248817, 259921] PRK05399 YtxK COG4646 RVT-GII Intron_maturas2 HNHc COG4646 KOG1000 DUF3848 DUF3849 Feature: gene Location: 248817-254747 bp Feature: domain Description: PRK05399 Location: 249840-250080 bp Feature: domain Description: PRK053 99 Location: 249840-250080 bp Feature: domain Description: YtxK Location: 252132-252504 bp Feature: domain Description: YtxK Location: 25213 2-252504 bp Feature: domain Description: COG4646 Location: 252576-254733 bp Feature: domain Description: COG4646 Location: 252576-25473 3 bp Feature: gene Location: 255178-255360 bp Feature: gene Location: 255323-257137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255590-256406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255590-256406 bp Feature: domain Description: Intron_maturas2 Location: 256475-256805 bp Feature: domain Description: Intron_maturas2 Location: 256475-256805 bp Feature: domain Description: HNHc Note: nucleases Location: 256955-257102 bp Feature: domain Description: HNHc Note: nucleases Location: 256955-257102 bp Feature: gene Location: 257134-259101 bp Feature: domain Description: COG4646 Location: 257245-257662 bp Feature: domain Description: COG4646 Location: 257245-257662 bp Feature: domain Description: KOG1000 Location: 258097-258301 bp Feature: domain Description: KOG1000 Location: 258097-2583 01 bp Feature: gene Location: 259103-259921 bp Feature: domain Description: DUF3848 Location: 259121-259400 bp Feature: domain Description: DUF3 848 Location: 259121-259400 bp Feature: domain Description: DUF3849 Location: 259439-259799 bp Feature: domain Description: DUF3 849 Location: 25943 9-259799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05399 (DNA mismatch repair protein MutS; Provisional), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), DUF3848 (pfam12959), DUF3849 (pfam12960)